Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G35270 Arabidopsis lyrata HOM05D019143 ORTHO05D019731 2.7e-61 238.4 114 100.0
Thhalv10009637m.g Eutrema salsugineum HOM05D019143 ORTHO05D019731 2.4e-14 82.4 62 61.3
BcaB01g03704 Brassica carinata HOM05D019143 ORTHO05D019731 7.4e-11 70.9 114 35.1
AL4G35430 Arabidopsis lyrata HOM05D031911 ORTHO05D031281 1.1e-09 67.0 65 41.5
AL4G35460 Arabidopsis lyrata HOM05D031911 ORTHO05D031281 1.1e-09 67.0 65 41.5
Os05g0550000 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000230 4.5e-08 61.6 48 45.8
Sed0018606 Sechium edule HOM05D000187 ORTHO05D000230 5.8e-08 61.2 61 39.3
BolC3t14929H Brassica oleracea HOM05D019143 ORTHO05D019731 7.6e-08 60.8 45 60.0
AUR62029913 Chenopodium quinoa HOM05D000187 ORTHO05D000230 7.6e-08 60.8 60 40.0
Sabra12G0037600 Salix brachista HOM05D000187 ORTHO05D000230 7.6e-08 60.8 46 52.2
Gohir.A07G059400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 9.9e-08 60.5 45 48.9
C03p25350 Brassica napus HOM05D019143 ORTHO05D019731 1.3e-07 60.1 39 64.1
A03p21440 Brassica napus HOM05D019143 ORTHO05D019731 1.7e-07 59.7 45 60.0
BraA03t11380Z Brassica rapa HOM05D019143 ORTHO05D019731 1.7e-07 59.7 45 60.0
AUR62033794 Chenopodium quinoa HOM05D000187 ORTHO05D000230 1.7e-07 59.7 60 40.0
Peaxi162Scf01164g00001 Petunia axillaris HOM05D000341 ORTHO05D001197 1.7e-07 59.7 51 43.1
Gohir.D07G064200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 2.2e-07 59.3 45 46.7
Gorai.001G067700 Gossypium raimondii HOM05D000187 ORTHO05D000230 2.2e-07 59.3 45 46.7
Manes.05G133100 Manihot esculenta HOM05D000187 ORTHO05D000230 2.9e-07 58.9 46 47.8
Hund02352 Selenicereus undatus HOM05D000187 ORTHO05D000230 2.9e-07 58.9 46 47.8
Solyc07g045190.3 Solanum lycopersicum HOM05D000341 ORTHO05D001197 2.9e-07 58.9 51 43.1
Sopen07g023740 Solanum pennellii HOM05D000341 ORTHO05D001197 2.9e-07 58.9 51 43.1
THA.LOC104822440 Tarenaya hassleriana HOM05D000341 ORTHO05D001197 2.9e-07 58.9 49 49.0
Zm00001eb156060 Zea mays HOM05D000187 ORTHO05D000230 2.9e-07 58.9 45 48.9
AL1G30330 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 3.8e-07 58.5 45 48.9
CsaV3_1G006940 Cucumis sativus L. HOM05D000187 ORTHO05D000230 4.9e-07 58.2 45 46.7
Aa31sc466G20 Aethionema arabicum HOM05D000341 ORTHO05D001197 8.4e-07 57.4 48 50.0
Duzib205G0431 Durio zibethinus HOM05D000187 ORTHO05D000230 8.4e-07 57.4 45 44.4
Thecc.03G042900 Theobroma cacao HOM05D000187 ORTHO05D000230 8.4e-07 57.4 45 44.4
vmacro17698 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 8.4e-07 57.4 45 46.7
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 1.1e-06 57.0 44 47.7
CARHR018580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 1.1e-06 57.0 45 46.7
Nitab4.5_0000150g0050 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.1e-06 57.0 46 43.5
SGA_v2.0_scaffold168G38479 Striga asiatica HOM05D000187 ORTHO05D000230 1.1e-06 57.0 45 48.9
Aqoxy1G01040 Aquilegia oxysepala HOM05D000086 ORTHO05D010642 1.4e-06 56.6 66 39.4
Atru.chr9.914 Acer truncatum HOM05D000187 ORTHO05D000230 1.9e-06 56.2 46 43.5
Peaxi162Scf01127g00032 Petunia axillaris HOM05D000187 ORTHO05D000230 1.9e-06 56.2 46 43.5
Sed0023942 Sechium edule HOM05D000187 ORTHO05D000230 1.9e-06 56.2 45 44.4
Nitab4.5_0003086g0040 Nicotiana tabacum HOM05D000341 ORTHO05D001197 2.4e-06 55.8 51 41.2
Nitab4.5_0004941g0020 Nicotiana tabacum HOM05D000341 ORTHO05D001197 2.4e-06 55.8 51 41.2
Os06g0233200 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000983 2.4e-06 55.8 47 46.8
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 2.4e-06 55.8 45 46.7
Sc04g0003340 Simmondsia chinensis HOM05D000187 ORTHO05D000230 2.4e-06 55.8 46 43.5
Haze_18740 Corylus avellana HOM05D000187 ORTHO05D000230 3.2e-06 55.5 46 43.5
Oeu000988.1 Olea europaea HOM05D000187 ORTHO05D000230 3.2e-06 55.5 45 44.4
Rhsim08G0130200 Rhododendron simsii HOM05D000187 ORTHO05D000230 3.2e-06 55.5 45 44.4
Ciclev10020624m.g Citrus clementina HOM05D000187 ORTHO05D000230 4.2e-06 55.1 46 41.3
COL.COLO4_38530 Corchorus olitorius HOM05D000187 ORTHO05D000230 4.2e-06 55.1 45 42.2
Duzib068G0915 Durio zibethinus HOM05D000187 ORTHO05D000230 4.2e-06 55.1 54 37.0
Duzib084G0101 Durio zibethinus HOM05D000187 ORTHO05D000230 4.2e-06 55.1 45 42.2
Nitab4.5_0001456g0140 Nicotiana tabacum HOM05D000187 ORTHO05D000230 4.2e-06 55.1 46 43.5
Nitab4.5_0006894g0010 Nicotiana tabacum HOM05D000187 ORTHO05D000230 4.2e-06 55.1 46 43.5
Thecc.01G402200 Theobroma cacao HOM05D000086 ORTHO05D004422 4.2e-06 55.1 47 51.1
A08p30610 Brassica napus HOM05D000187 ORTHO05D000230 5.5e-06 54.7 45 44.4
BraA08t34992Z Brassica rapa HOM05D000187 ORTHO05D000230 5.5e-06 54.7 45 44.4
Lj2g0003886 Lotus japonicus HOM05D000187 ORTHO05D000230 5.5e-06 54.7 45 46.7
TAR629G3526 Trochodendron aralioides HOM05D000187 ORTHO05D000230 5.5e-06 54.7 46 45.7
Actinidia18917 Actinidia chinensis HOM05D000187 ORTHO05D000230 7.1e-06 54.3 47 40.4
BcaC02g08342 Brassica carinata HOM05D009340 ORTHO05D012776 7.1e-06 54.3 49 46.9
C04p55500 Brassica napus HOM05D009340 ORTHO05D012776 7.1e-06 54.3 49 46.9
C08p18300 Brassica napus HOM05D000187 ORTHO05D000230 7.1e-06 54.3 45 44.4
BolC4t27076H Brassica oleracea HOM05D009340 ORTHO05D012776 7.1e-06 54.3 49 46.9
BolC8t49464H Brassica oleracea HOM05D000187 ORTHO05D000230 7.1e-06 54.3 45 44.4
Manes.01G015300 Manihot esculenta HOM05D000187 ORTHO05D000230 7.1e-06 54.3 46 43.5
TPR.G12745 Trifolium pratense HOM05D000187 ORTHO05D000230 7.1e-06 54.3 70 32.9
Actinidia35102 Actinidia chinensis HOM05D000187 ORTHO05D000230 9.3e-06 53.9 47 40.4
EL10Ac9g21566 Beta vulgaris HOM05D000045 ORTHO05D000067 9.3e-06 53.9 43 53.5
Haze_19167 Corylus avellana HOM05D013045 ORTHO05D000038 9.3e-06 53.9 70 38.6
Glyma.07G097700 Glycine max HOM05D000187 ORTHO05D000230 9.3e-06 53.9 45 42.2
Hma1.2p1_2594F.1_g325080 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 9.3e-06 53.9 45 42.2
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 9.3e-06 53.9 45 44.4
Nn3g17958 Nelumbo nucifera HOM05D000187 ORTHO05D000230 9.3e-06 53.9 46 43.5
Os02g0743100 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000983 9.3e-06 53.9 47 46.8


User provided reference genes

Program Settings