Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 6.4e-38 160.2 79 100.0
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 6.4e-38 160.2 79 100.0
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 4.1e-37 157.5 79 98.7
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 4.1e-37 157.5 79 98.7
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 5.4e-37 157.1 79 96.2
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 5.4e-37 157.1 79 96.2
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 5.4e-37 157.1 79 98.7
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 7.1e-37 156.8 79 97.5
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 7.1e-37 156.8 79 97.5
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 7.1e-37 156.8 79 97.5
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.5e-36 154.5 79 97.5
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 4.6e-36 154.1 79 96.2
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 4.6e-36 154.1 79 96.2
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 4.6e-36 154.1 79 96.2
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 4.6e-36 154.1 79 96.2
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 8.6e-35 149.8 79 92.4
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 2.4e-32 141.7 79 91.1
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.3e-30 136.0 79 83.5
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.7e-30 135.6 79 83.5
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 2.2e-30 135.2 79 83.5
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 8.4e-30 133.3 79 81.0
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.1e-29 132.9 79 82.3
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 1.1e-29 132.9 79 78.5
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.9e-29 132.1 79 78.5
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 9.2e-29 129.8 79 79.7
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.2e-28 129.4 79 79.7
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.2e-28 129.4 79 82.3
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 2.1e-28 128.6 79 81.0
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 4.6e-28 127.5 79 75.9
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 6.0e-28 127.1 79 79.7
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 7.8e-28 126.7 79 78.5
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 5.1e-27 124.0 79 73.4
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 5.1e-27 124.0 79 74.7
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 6.6e-27 123.6 80 77.5
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 2.5e-26 121.7 79 78.5
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.5e-26 121.7 79 77.2
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 4.3e-26 120.9 80 76.2
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 5.6e-26 120.6 79 81.0
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 5.6e-26 120.6 79 73.4
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 7.3e-26 120.2 80 76.2
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 7.3e-26 120.2 80 76.2
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 9.6e-26 119.8 79 75.9
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.2e-25 119.4 79 74.7
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 2.1e-25 118.6 75 77.3
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.8e-25 118.2 79 73.4
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 3.6e-25 117.9 79 69.6
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.7e-25 117.5 79 74.7
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 6.2e-25 117.1 79 72.2
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.4e-24 115.9 79 70.9
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.4e-24 115.9 78 73.1
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.0e-23 112.1 71 74.6
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.4e-23 111.3 79 65.8
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 4.4e-23 110.9 79 70.9
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.7e-22 109.0 84 67.9
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 6.4e-22 107.1 79 65.8
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.1e-21 106.3 79 68.4
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 1.1e-21 106.3 79 63.3
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 67.9
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 64.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 68.4
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 1.9e-21 105.5 79 69.6
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 3.2e-21 104.8 79 60.8
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 4.2e-21 104.4 79 67.1
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 4.2e-21 104.4 79 67.1
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 4.2e-21 104.4 79 67.1
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 64.6
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 67.1
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 67.1
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 5.4e-21 104.0 79 67.1
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 67.1
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 67.1
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 62.0
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 67.1
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 7.1e-21 103.6 79 65.8
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 67.1
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 67.1
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 62.0
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 62.0
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 9.3e-21 103.2 79 65.8
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 61.5
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.6e-20 102.4 79 64.6
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 65.8
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 63.3
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 64.6
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 65.8
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.1e-20 102.1 79 64.6
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 59.5
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 64.6
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 64.6
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 67.1
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 65.8
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 65.8
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 4.6e-20 100.9 79 65.8
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 4.6e-20 100.9 79 63.3
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 4.6e-20 100.9 79 63.3
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 64.6
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.0e-20 100.5 79 63.3
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 65.8
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 60.8
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 7.8e-20 100.1 79 63.3
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 63.3
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 63.3
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.0e-19 99.8 79 63.3
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 62.0
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 63.3
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 64.6
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.3e-19 99.4 78 61.5
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.3e-19 99.4 79 63.3
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.7e-19 99.0 79 62.0
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 62.0
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 62.0
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 63.3
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 2.3e-19 98.6 79 63.3
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 62.0
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 62.0
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 62.0
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 3.0e-19 98.2 79 63.3
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 3.9e-19 97.8 78 62.8
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 60.8
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 3.9e-19 97.8 75 62.7
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 3.9e-19 97.8 79 60.8
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 5.1e-19 97.4 79 63.3
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 5.1e-19 97.4 79 60.8
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 5.1e-19 97.4 79 62.0
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 5.1e-19 97.4 75 64.0
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 6.6e-19 97.1 79 63.3
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 8.7e-19 96.7 75 66.7
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 8.7e-19 96.7 79 60.8
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 62.0
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.5e-18 95.9 79 60.8
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.9e-18 95.5 79 62.0
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.9e-18 95.5 79 60.8
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 2.5e-18 95.1 79 60.8
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 3.3e-18 94.7 79 60.8
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 3.3e-18 94.7 79 60.8
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 3.3e-18 94.7 79 60.8
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 4.3e-18 94.4 75 60.0
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 4.3e-18 94.4 79 58.2
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 4.3e-18 94.4 79 60.8
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 5.6e-18 94.0 63 77.8
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 5.6e-18 94.0 79 58.2
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.3e-18 93.6 79 62.0
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 7.3e-18 93.6 78 57.7
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 9.6e-18 93.2 77 59.7
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.3e-17 92.8 79 59.5
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.3e-17 92.8 79 58.2
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.6e-17 92.4 79 59.5
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 1.6e-17 92.4 79 55.7
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.8e-17 91.7 79 58.2
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 3.6e-17 91.3 79 57.0
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 6.2e-17 90.5 79 57.0
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 8.1e-17 90.1 79 59.5
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 5.3e-16 87.4 48 83.3
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 9.0e-16 86.7 74 59.5
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 1.2e-15 86.3 63 63.5
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.5e-15 85.9 79 53.2
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.6e-15 85.1 57 73.7
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 3.4e-15 84.7 76 55.3
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 4.9e-14 80.9 79 53.2
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.4e-13 79.3 73 58.9
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 4.2e-13 77.8 79 53.2
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.3e-13 76.6 53 67.9
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.3e-13 76.6 53 67.9
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 1.9e-10 68.9 52 61.5
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 2.1e-09 65.5 61 50.8
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 6.2e-09 63.9 70 45.7
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 1.4e-08 62.8 79 44.3
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.4e-08 62.0 29 100.0
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.5e-07 59.3 35 71.4
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.5e-07 59.3 42 69.0
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 2.0e-07 58.9 74 44.6
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 5.8e-07 57.4 80 43.8
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 7.6e-07 57.0 40 70.0
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 2.9e-06 55.1 80 40.0


User provided reference genes

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