Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34780 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 5.8e-88 327.4 151 100.0
AT2G37810 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 2.4e-78 295.4 150 90.0
AL4G34760 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 6.6e-68 260.8 149 85.2
SpUn0309_0030 Schrenkiella parvula HOM05D000790 ORTHO05D000769 2.5e-43 179.1 158 59.5
AL4G34750 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 5.3e-41 171.4 156 57.7
Thhalv10017138m.g Eutrema salsugineum HOM05D000790 ORTHO05D000769 7.6e-40 167.5 158 58.2
AT2G37805 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 3.8e-39 165.2 153 56.9
AT2G37800 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 8.5e-39 164.1 163 54.6
BcaC01g05590 Brassica carinata HOM05D000790 ORTHO05D000769 8.5e-39 164.1 155 54.8
C03p24530 Brassica napus HOM05D000790 ORTHO05D000769 8.5e-39 164.1 155 54.8
AL4G34730 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 1.4e-38 163.3 152 55.9
AL68U10030 Arabidopsis lyrata HOM05D000790 ORTHO05D000769 1.4e-38 163.3 152 55.9
BolC3t14851H Brassica oleracea HOM05D000790 ORTHO05D000769 4.2e-38 161.8 155 54.2
BraA03t11328Z Brassica rapa HOM05D000790 ORTHO05D000769 3.3e-35 152.1 152 51.3
BcaB06g29030 Brassica carinata HOM05D000790 ORTHO05D000769 2.4e-33 146.0 105 63.8
BcaB01g03751 Brassica carinata HOM05D000790 ORTHO05D000769 9.1e-33 144.1 103 64.1
BcaB01g03753 Brassica carinata HOM05D000790 ORTHO05D000769 5.9e-32 141.4 92 68.5
BcaB01g03750 Brassica carinata HOM05D000790 ORTHO05D000769 1.3e-31 140.2 149 49.7
A03p20880 Brassica napus HOM05D000790 ORTHO05D000769 1.3e-31 140.2 141 51.1
Thhalv10017531m.g Eutrema salsugineum HOM05D000790 ORTHO05D000769 1.4e-28 130.2 150 44.7
Thhalv10017725m.g Eutrema salsugineum HOM05D000790 ORTHO05D000769 9.7e-27 124.0 148 41.2
THA.LOC104807012 Tarenaya hassleriana HOM05D000790 ORTHO05D000769 9.1e-25 117.5 167 41.3
AT2G37820 Arabidopsis thaliana HOM05D000790 ORTHO05D000769 8.5e-23 110.9 192 36.5
CARHR131730 Cardamine hirsuta HOM05D000790 ORTHO05D000769 4.2e-22 108.6 95 50.5
Duzib128G1286 Durio zibethinus HOM05D000790 ORTHO05D000769 9.4e-22 107.5 89 51.7
Thhalv10017859m.g Eutrema salsugineum HOM05D000790 ORTHO05D000769 9.4e-22 107.5 80 56.2
SpUn0309_0020 Schrenkiella parvula HOM05D000790 ORTHO05D000769 1.2e-21 107.1 81 55.6
A05p08120 Brassica napus HOM05D000790 ORTHO05D000769 2.1e-21 106.3 94 51.1
BraA05t19780Z Brassica rapa HOM05D000790 ORTHO05D000769 2.1e-21 106.3 94 51.1
BcaB02g09242 Brassica carinata HOM05D000790 ORTHO05D000769 6.1e-21 104.8 94 50.0
Aa31sc218G70 Aethionema arabicum HOM05D000790 ORTHO05D000769 1.4e-20 103.6 157 39.5
BcaC02g11912 Brassica carinata HOM05D000790 ORTHO05D000769 1.8e-20 103.2 94 50.0
BolC4t22610H Brassica oleracea HOM05D000790 ORTHO05D000769 1.8e-20 103.2 94 50.0
C04p10050 Brassica napus HOM05D000790 ORTHO05D000769 2.3e-20 102.8 94 50.0
Carub.0004s1974 Capsella rubella HOM05D000790 ORTHO05D000769 3.0e-20 102.4 95 49.5
Aa31LG2G10380 Aethionema arabicum HOM05D000790 ORTHO05D000769 2.6e-19 99.4 148 38.5
Migut.F01291 Erythranthe guttata HOM05D000790 ORTHO05D000769 1.3e-18 97.1 80 52.5
PGSC0003DMG400008815 Solanum tuberosum HOM05D000790 ORTHO05D000769 1.3e-18 97.1 138 37.7
Actinidia11288 Actinidia chinensis HOM05D000790 ORTHO05D000769 1.7e-18 96.7 82 48.8
BcaB06g29027 Brassica carinata HOM05D000790 ORTHO05D000769 2.2e-18 96.3 140 39.3
SalBow5G2161 Salvia bowleyana HOM05D000790 ORTHO05D000769 6.3e-18 94.7 111 40.5
Solyc09g011260.2 Solanum lycopersicum HOM05D000790 ORTHO05D000769 8.2e-18 94.4 85 49.4
MSTRG.5637 Avicennia marina HOM05D000790 ORTHO05D000769 1.4e-17 93.6 81 45.7
Peaxi162Scf00318g00726 Petunia axillaris HOM05D000790 ORTHO05D000769 1.8e-17 93.2 84 48.8
Peaxi162Scf00318g00917 Petunia axillaris HOM05D000790 ORTHO05D000769 1.8e-17 93.2 133 36.8
Solyc09g011270.4 Solanum lycopersicum HOM05D000790 ORTHO05D000769 1.8e-17 93.2 83 47.0
CAN.G475.2 Capsicum annuum HOM05D000790 ORTHO05D000769 3.1e-17 92.4 83 48.2
Nitab4.5_0003098g0090 Nicotiana tabacum HOM05D000790 ORTHO05D000769 3.1e-17 92.4 105 42.9
PGSC0003DMG401008889 Solanum tuberosum HOM05D000790 ORTHO05D000769 3.1e-17 92.4 91 47.3
Migut.F01292 Erythranthe guttata HOM05D000790 ORTHO05D000769 5.3e-17 91.7 151 37.7
Sopen09g006010 Solanum pennellii HOM05D010579 ORTHO05D013053 5.3e-17 91.7 83 45.8
COL.COLO4_28405 Corchorus olitorius HOM05D000790 ORTHO05D000769 7.0e-17 91.3 82 46.3
MSTRG.5636 Avicennia marina HOM05D000790 ORTHO05D000769 9.1e-17 90.9 81 44.4
Migut.J00283 Erythranthe guttata HOM05D000790 ORTHO05D000769 9.1e-17 90.9 83 45.8
Duzib106G1092 Durio zibethinus HOM05D000790 ORTHO05D000769 2.0e-16 89.7 116 38.8
Peaxi162Scf00318g00916 Petunia axillaris HOM05D000790 ORTHO05D000769 2.0e-16 89.7 84 45.2
Thecc.05G032100 Theobroma cacao HOM05D000790 ORTHO05D000769 3.5e-16 89.0 80 46.2
Migut.J00282 Erythranthe guttata HOM05D000790 ORTHO05D000769 4.5e-16 88.6 83 44.6
Migut.F01293 Erythranthe guttata HOM05D000790 ORTHO05D000769 1.3e-15 87.0 82 42.7
Nn3g19438 Nelumbo nucifera HOM05D000790 ORTHO05D000769 3.8e-15 85.5 105 38.1
Peaxi162Scf00318g00089 Petunia axillaris HOM05D000790 ORTHO05D000769 3.8e-15 85.5 84 45.2
DCAR_030896 Daucus carota HOM05D000790 ORTHO05D000769 8.5e-15 84.3 107 40.2
Nitab4.5_0000362g0030 Nicotiana tabacum HOM05D000790 ORTHO05D000769 1.5e-14 83.6 83 45.8
Oeu053769.1 Olea europaea HOM05D000790 ORTHO05D000769 1.9e-14 83.2 81 40.7
Potri.010G198200 Populus trichocarpa HOM05D000790 ORTHO05D000769 1.9e-14 83.2 81 44.4
Migut.F01298 Erythranthe guttata HOM05D000790 ORTHO05D000769 3.2e-14 82.4 80 47.5
Lj3A963T61 Lonicera japonica HOM05D000790 ORTHO05D000769 3.2e-14 82.4 81 45.7
Peaxi162Scf00318g00918 Petunia axillaris HOM05D000790 ORTHO05D000769 3.2e-14 82.4 83 44.6
Peaxi162Scf00318g00920 Petunia axillaris HOM05D000790 ORTHO05D000769 4.2e-14 82.0 83 41.0
Nitab4.5_0003098g0040 Nicotiana tabacum HOM05D000790 ORTHO05D000769 1.2e-13 80.5 121 37.2
Thecc.05G032000 Theobroma cacao HOM05D000790 ORTHO05D000769 1.2e-13 80.5 80 45.0
Peaxi162Scf00318g00921 Petunia axillaris HOM05D000790 ORTHO05D000769 1.6e-13 80.1 82 42.7
SalBow5G3773 Salvia bowleyana HOM05D000790 ORTHO05D000769 4.7e-13 78.6 111 37.8
Lj2C88T14 Lonicera japonica HOM05D000790 ORTHO05D000769 6.1e-13 78.2 102 37.3
EL10Ac4g08254 Beta vulgaris HOM05D000790 ORTHO05D000769 1.4e-12 77.0 82 41.5
Hma1.2p1_0293F.1_g116310 Hydrangea macrophylla HOM05D000790 ORTHO05D000769 1.8e-12 76.6 82 42.7
ClCG04G007820 Citrullus lanatus HOM05D000790 ORTHO05D000769 1.2e-11 73.9 104 35.6
PGR142G4447 Punica granatum HOM05D000790 ORTHO05D000769 2.6e-11 72.8 118 32.2
Ah.14g084210 Amaranthus hybridus HOM05D000790 ORTHO05D000769 3.3e-11 72.4 82 37.8
Migut.F01297 Erythranthe guttata HOM05D000790 ORTHO05D000769 3.3e-11 72.4 80 43.8
Migut.F01299 Erythranthe guttata HOM05D000790 ORTHO05D000769 4.4e-11 72.0 80 43.8
Sed0014886 Sechium edule HOM05D000790 ORTHO05D000769 5.7e-11 71.6 91 39.6
DCAR_025885 Daucus carota HOM05D000790 ORTHO05D000769 7.5e-11 71.2 122 35.2
Dinv07257 Davidia involucrata HOM05D000125 ORTHO05D000807 9.7e-11 70.9 91 37.4
MELO3C003159.2 Cucumis melo HOM05D000790 ORTHO05D000769 1.3e-10 70.5 98 38.8
ClCG04G007840 Citrullus lanatus HOM05D000790 ORTHO05D000769 2.8e-10 69.3 82 40.2
CsaV3_4G025360 Cucumis sativus L. HOM05D000790 ORTHO05D000769 2.8e-10 69.3 82 41.5
Sc04g0001130 Simmondsia chinensis HOM05D000790 ORTHO05D000769 6.3e-10 68.2 106 37.7
Migut.B01369 Erythranthe guttata HOM05D000125 ORTHO05D000807 8.2e-10 67.8 94 33.0
Sed0023027 Sechium edule HOM05D000790 ORTHO05D000769 8.2e-10 67.8 95 40.0
CsaV3_4G025410 Cucumis sativus L. HOM05D000790 ORTHO05D000769 1.1e-09 67.4 81 35.8
SEGI_00780 Sequoiadendron giganteum HOM05D000125 ORTHO05D000807 1.1e-09 67.4 108 33.3
THA.LOC104817157 Tarenaya hassleriana HOM05D000125 ORTHO05D000807 1.1e-09 67.4 84 38.1
MELO3C003164.2 Cucumis melo HOM05D000790 ORTHO05D000769 1.8e-09 66.6 81 37.0
ATR0559G069 Amborella trichopoda HOM05D000790 ORTHO05D000769 2.4e-09 66.2 99 35.4
Sed0016199 Sechium edule HOM05D000790 ORTHO05D000769 3.1e-09 65.9 119 30.3
Sed0008735 Sechium edule HOM05D000790 ORTHO05D000769 7.0e-09 64.7 81 34.6
MELO3C003163.2 Cucumis melo HOM05D000790 ORTHO05D000769 9.1e-09 64.3 82 37.8
Lj5P163T50 Lonicera japonica HOM05D000125 ORTHO05D000807 9.1e-09 64.3 96 33.3
CsaV3_4G025400 Cucumis sativus L. HOM05D000790 ORTHO05D000769 1.2e-08 63.9 82 37.8
ClCG04G007850 Citrullus lanatus HOM05D000790 ORTHO05D000769 2.0e-08 63.2 82 32.9
PGSC0003DMG400006309 Solanum tuberosum HOM05D000125 ORTHO05D000807 3.5e-08 62.4 139 29.5
Thecc.05G031900 Theobroma cacao HOM05D000790 ORTHO05D000769 4.5e-08 62.0 102 34.3
BcaC02g10893 Brassica carinata HOM05D000125 ORTHO05D000807 1.0e-07 60.8 91 35.2
C04p24000 Brassica napus HOM05D000125 ORTHO05D000807 1.0e-07 60.8 91 35.2
BolC4t23893H Brassica oleracea HOM05D000125 ORTHO05D000807 1.0e-07 60.8 91 35.2
Carub.0004s2698 Capsella rubella HOM05D000125 ORTHO05D000807 1.0e-07 60.8 94 35.1
MELO3C003160.2 Cucumis melo HOM05D000790 ORTHO05D000769 1.0e-07 60.8 90 28.9
Os07g0609100 Oryza sativa ssp. japonica HOM05D000790 ORTHO05D000769 1.0e-07 60.8 95 33.7
Sp4g10440 Schrenkiella parvula HOM05D000125 ORTHO05D000807 1.0e-07 60.8 91 34.1
THA.LOC104827679 Tarenaya hassleriana HOM05D000125 ORTHO05D000807 1.0e-07 60.8 114 28.1
PSO513G0147 Papaver somniferum HOM05D000790 ORTHO05D000769 1.3e-07 60.5 99 29.3
Peaxi162Scf00878g00112 Petunia axillaris HOM05D000125 ORTHO05D000807 1.3e-07 60.5 120 32.5
CARHR139560 Cardamine hirsuta HOM05D000125 ORTHO05D000807 1.7e-07 60.1 99 33.3
Nitab4.5_0003362g0060 Nicotiana tabacum HOM05D000790 ORTHO05D000769 1.7e-07 60.1 105 35.2
BcaB02g10100 Brassica carinata HOM05D000125 ORTHO05D000807 2.2e-07 59.7 111 30.6
Pp3c3_37880 Physcomitrium patens HOM05D000790 ORTHO05D000807 2.2e-07 59.7 94 31.9
THA.LOC104826413 Tarenaya hassleriana HOM05D000125 ORTHO05D000807 2.2e-07 59.7 90 37.8
Actinidia15853 Actinidia chinensis HOM05D000125 ORTHO05D000807 2.9e-07 59.3 95 31.6
AT2G44400 Arabidopsis thaliana HOM05D000125 ORTHO05D000807 2.9e-07 59.3 89 36.0
A07p18310 Brassica napus HOM05D000125 ORTHO05D000807 2.9e-07 59.3 91 35.2
Cc04_g09330 Coffea canephora HOM05D000125 ORTHO05D000807 2.9e-07 59.3 96 31.2
Thhalv10016319m.g Eutrema salsugineum HOM05D000125 ORTHO05D000807 2.9e-07 59.3 91 34.1
PSO339G0275 Papaver somniferum HOM05D000790 ORTHO05D000769 2.9e-07 59.3 93 30.1
BraA07t29547Z Brassica rapa HOM05D000125 ORTHO05D000807 3.8e-07 58.9 91 35.2
SalBow3G2600 Salvia bowleyana HOM05D000790 ORTHO05D000769 3.8e-07 58.9 80 35.0
PGSC0003DMG400033695 Solanum tuberosum HOM05D000125 ORTHO05D000807 3.8e-07 58.9 95 30.5
AL4G43390 Arabidopsis lyrata HOM05D000125 ORTHO05D000807 5.0e-07 58.5 91 35.2
Ciclev10027368m.g Citrus clementina HOM05D000125 ORTHO05D000807 5.0e-07 58.5 94 28.7
PSO339G2536 Papaver somniferum HOM05D000790 ORTHO05D000769 5.0e-07 58.5 88 33.0
Sabra12G0026700 Salix brachista HOM05D000125 ORTHO05D000807 5.0e-07 58.5 88 36.4
Lsat_1_v5_gn_8_145260 Lactuca sativa HOM05D000125 ORTHO05D000807 6.5e-07 58.2 91 35.2
A04p33330 Brassica napus HOM05D000125 ORTHO05D000807 8.5e-07 57.8 121 28.9
BraA04t18792Z Brassica rapa HOM05D000125 ORTHO05D000807 8.5e-07 57.8 121 28.9
CsaV3_4G025370 Cucumis sativus L. HOM05D000790 ORTHO05D000769 8.5e-07 57.8 90 28.9
Os07g0611500 Oryza sativa ssp. japonica HOM05D000790 ORTHO05D000769 8.5e-07 57.8 92 37.0
ECA232G1633 Erigeron canadensis HOM05D000790 ORTHO05D000769 1.1e-06 57.4 87 35.6
Nitab4.5_0004855g0030 Nicotiana tabacum HOM05D000125 ORTHO05D000807 1.1e-06 57.4 120 30.8
Atru.chr9.1573 Acer truncatum HOM05D000125 ORTHO05D000807 1.5e-06 57.0 138 31.2
ATR0559G212 Amborella trichopoda HOM05D000790 ORTHO05D000769 1.5e-06 57.0 87 34.5
FvH4_2g17140 Fragaria vesca HOM05D000790 ORTHO05D000769 1.5e-06 57.0 161 26.7
FAN24G0258 Fragaria x ananassa HOM05D000790 ORTHO05D000769 1.5e-06 57.0 161 26.7
Os07g0611400 Oryza sativa ssp. japonica HOM05D000790 ORTHO05D000769 1.5e-06 57.0 86 33.7
RcHm_v2.0_Chr6g0281581 Rosa chinensis HOM05D000790 ORTHO05D000769 1.5e-06 57.0 161 26.7
CARHR120270 Cardamine hirsuta HOM05D000125 ORTHO05D000807 1.9e-06 56.6 91 34.1
BolC4t28606H Brassica oleracea HOM05D000125 ORTHO05D000807 2.5e-06 56.2 121 28.9
CARHR250050 Cardamine hirsuta HOM05D000125 ORTHO05D000120 2.5e-06 56.2 84 31.0
COL.COLO4_14725 Corchorus olitorius HOM05D000790 ORTHO05D000769 2.5e-06 56.2 48 45.8
Migut.F01294 Erythranthe guttata HOM05D000790 ORTHO05D000769 2.5e-06 56.2 73 35.6
Cpa.g.sc189.10 Carica papaya HOM05D000125 ORTHO05D000807 3.2e-06 55.8 86 32.6
Ciclev10013388m.g Citrus clementina HOM05D000125 ORTHO05D000807 3.2e-06 55.8 113 27.4
Cc02_g27030 Coffea canephora HOM05D000125 ORTHO05D000807 3.2e-06 55.8 87 33.3
Manes.15G146800 Manihot esculenta HOM05D000790 ORTHO05D000769 3.2e-06 55.8 80 35.0
Solyc03g097960.1 Solanum lycopersicum HOM05D000125 ORTHO05D000807 3.2e-06 55.8 87 31.0
FAN15G1228 Fragaria x ananassa HOM05D000790 ORTHO05D000769 4.2e-06 55.5 160 26.2
FAN27G1479 Fragaria x ananassa HOM05D000790 ORTHO05D000769 4.2e-06 55.5 149 26.2
Lsat_1_v5_gn_9_63460 Lactuca sativa HOM05D000790 ORTHO05D000769 4.2e-06 55.5 81 39.5
PSO063G0246 Papaver somniferum HOM05D000790 ORTHO05D000769 4.2e-06 55.5 86 29.1
Sabra04G0141100 Salix brachista HOM05D000790 ORTHO05D000769 4.2e-06 55.5 129 25.6
Solyc01g073890.3 Solanum lycopersicum HOM05D000125 ORTHO05D000807 4.2e-06 55.5 134 25.4
Sopen03g028670 Solanum pennellii HOM05D000125 ORTHO05D000807 4.2e-06 55.5 87 31.0
ClCG02G010740 Citrullus lanatus HOM05D000790 ORTHO05D000769 5.5e-06 55.1 135 25.2
CsaV3_3G038730 Cucumis sativus L. HOM05D000125 ORTHO05D000807 5.5e-06 55.1 83 31.3
CsaV3_6G009970 Cucumis sativus L. HOM05D000790 ORTHO05D000769 5.5e-06 55.1 135 25.2
PSO541G3393 Papaver somniferum HOM05D000790 ORTHO05D000769 5.5e-06 55.1 126 25.4
CDE04G0858 Ceratophyllum demersum HOM05D000790 ORTHO05D000769 7.2e-06 54.7 80 33.8
Duzib147G0906 Durio zibethinus HOM05D000125 ORTHO05D000807 7.2e-06 54.7 98 28.6
FAN09G2829 Fragaria x ananassa HOM05D000125 ORTHO05D000807 7.2e-06 54.7 93 34.4
Gohir.A05G292200 Gossypium hirsutum HOM05D000125 ORTHO05D000120 7.2e-06 54.7 81 30.9
PSO339G6318 Papaver somniferum HOM05D000790 ORTHO05D000769 7.2e-06 54.7 94 29.8
PSO384G0778 Papaver somniferum HOM05D000790 ORTHO05D000769 7.2e-06 54.7 94 29.8
PSO513G0168 Papaver somniferum HOM05D000790 ORTHO05D000769 7.2e-06 54.7 94 31.9
MSTRG.22870 Avicennia marina HOM05D000125 ORTHO05D000807 9.4e-06 54.3 96 28.1
C04p66210 Brassica napus HOM05D000790 ORTHO05D000769 9.4e-06 54.3 45 48.9
MELO3C013478.2 Cucumis melo HOM05D000790 ORTHO05D000769 9.4e-06 54.3 135 25.2
FAN02G4593 Fragaria x ananassa HOM05D001575 ORTHO05D001536 9.4e-06 54.3 93 34.4
Gohir.A07G218500 Gossypium hirsutum HOM05D000125 ORTHO05D000807 9.4e-06 54.3 88 31.8
Gohir.D07G225600 Gossypium hirsutum HOM05D000125 ORTHO05D000807 9.4e-06 54.3 88 31.8
Nitab4.5_0000892g0180 Nicotiana tabacum HOM05D000125 ORTHO05D000807 9.4e-06 54.3 90 33.3
PSO339G2964 Papaver somniferum HOM05D000790 ORTHO05D000769 9.4e-06 54.3 145 25.5
Peaxi162Scf00075g01212 Petunia axillaris HOM05D000125 ORTHO05D022976 9.4e-06 54.3 146 26.0
Potri.004G149500 Populus trichocarpa HOM05D000790 ORTHO05D000769 9.4e-06 54.3 80 33.8
PGR142G0838 Punica granatum HOM05D000790 ORTHO05D000769 9.4e-06 54.3 110 31.8
Sed0018399 Sechium edule HOM05D000790 ORTHO05D000769 9.4e-06 54.3 81 32.1
TWI09G0470 Tripterygium wilfordii HOM05D000125 ORTHO05D000120 9.4e-06 54.3 87 34.5
TWI09G1498 Tripterygium wilfordii HOM05D000125 ORTHO05D000807 9.4e-06 54.3 87 34.5


User provided reference genes

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