Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 7.1e-32 140.2 82 100.0
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 2.4e-27 125.2 83 83.1
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 1.7e-25 119.0 84 79.8
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 2.3e-22 108.6 84 71.4
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 5.1e-22 107.5 84 70.2
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 5.1e-22 107.5 84 70.2
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 6.7e-22 107.1 83 72.3
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 1.3e-20 102.8 81 69.1
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 1.6e-20 102.4 84 79.8
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 1.6e-20 102.4 84 79.8
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 3.7e-20 101.3 84 71.4
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 1.1e-19 99.8 82 74.4
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 5.3e-19 97.4 82 67.1
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 5.8e-18 94.0 82 64.6
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 5.8e-18 94.0 82 64.6
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 1.0e-17 93.2 82 61.0
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 1.7e-17 92.4 84 65.5
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 1.7e-17 92.4 82 64.6
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 2.2e-17 92.0 82 75.6
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 9.3e-16 86.7 84 65.5
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 9.3e-16 86.7 84 65.5
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 9.3e-16 86.7 84 65.5
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 9.3e-16 86.7 84 65.5
BraA03t11324Z Brassica rapa HOM05D009505 ORTHO05D007552 2.1e-15 85.5 87 73.6
A03p20830 Brassica napus HOM05D009505 ORTHO05D007552 7.9e-15 83.6 87 72.4
BcaC02g11900 Brassica carinata HOM05D009505 ORTHO05D007552 4.3e-13 77.8 52 76.9
BcaC02g11902 Brassica carinata HOM05D009505 ORTHO05D007552 4.3e-13 77.8 52 76.9
BolC4t22617H Brassica oleracea HOM05D009505 ORTHO05D007552 4.3e-13 77.8 52 76.9
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 7.4e-13 77.0 54 74.1
BcaC02g11899 Brassica carinata HOM05D009505 ORTHO05D007552 9.0e-11 70.1 87 52.9
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 3.8e-09 64.7 77 50.6
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.1e-08 63.2 88 45.5
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 5.5e-08 60.8 84 46.4
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 7.1e-08 60.5 86 45.3
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.6e-07 59.3 97 40.2
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 2.7e-07 58.5 85 43.5
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.6e-07 57.8 85 48.2
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.6e-07 57.8 83 44.6
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 6.1e-07 57.4 100 41.0
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 7.9e-07 57.0 85 51.8
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 7.9e-07 57.0 93 50.5
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.0e-06 56.6 98 39.8
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.8e-06 55.8 95 40.0
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 3.0e-06 55.1 86 40.7
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 5.1e-06 54.3 95 38.9
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 6.7e-06 53.9 96 43.8
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 6.7e-06 53.9 92 37.0


User provided reference genes

Program Settings