Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.5e-126 456.1 216 100.0
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.5e-126 456.1 216 100.0
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 2.2e-125 452.2 216 99.1
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 2.9e-125 451.8 216 99.1
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.4e-124 449.5 216 99.1
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.1e-123 445.7 216 97.2
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 8.7e-122 440.3 216 96.3
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.5e-121 438.7 216 95.8
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 7.4e-121 437.2 216 95.4
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.5e-118 429.5 216 93.1
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.1e-116 423.3 211 94.3
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.6e-115 418.3 214 92.1
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.3e-114 415.6 217 92.6
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.9e-114 414.8 203 95.6
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.9e-106 388.3 216 84.7
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.0e-105 386.0 216 84.3
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 4.4e-105 384.8 216 83.3
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 5.7e-105 384.4 216 83.3
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 7.4e-105 384.0 216 84.3
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 2.2e-104 382.5 220 83.2
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.2e-104 382.5 216 82.4
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 4.8e-104 381.3 217 83.9
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 81.9
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 215 82.3
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 215 82.3
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 2.4e-103 379.0 217 83.4
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.4e-103 379.0 217 82.9
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 3.1e-103 378.6 216 81.9
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 4.1e-103 378.3 216 81.5
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 4.1e-103 378.3 216 83.3
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 5.3e-103 377.9 216 81.9
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 7.0e-103 377.5 216 82.4
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 9.1e-103 377.1 217 82.9
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.2e-102 376.7 216 81.9
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.6e-102 376.3 216 81.0
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.0e-102 375.9 220 81.8
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 2.0e-102 375.9 218 81.7
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 3.5e-102 375.2 218 81.7
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 7.7e-102 374.0 216 81.5
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.0e-101 373.6 216 81.0
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.0e-101 373.6 214 80.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-101 373.2 216 80.6
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 1.3e-101 373.2 216 81.5
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 79.6
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 3.8e-101 371.7 238 75.2
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 3.8e-101 371.7 216 80.6
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 5.0e-101 371.3 216 79.2
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 5.0e-101 371.3 217 80.2
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 8.5e-101 370.5 218 80.7
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.5e-101 370.5 217 81.6
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 8.5e-101 370.5 216 79.6
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.1e-100 370.2 216 81.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.9e-100 369.4 216 80.1
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.5e-100 369.0 218 80.7
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 4.2e-100 368.2 219 79.0
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 4.2e-100 368.2 216 79.2
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.2e-99 366.7 216 78.7
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.2e-99 366.7 216 78.2
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 1.2e-99 366.7 211 81.0
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.6e-99 366.3 216 80.1
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 1.6e-99 366.3 232 75.9
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 2.1e-99 365.9 217 79.7
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 2.7e-99 365.5 216 80.1
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 3.6e-99 365.2 218 79.8
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 4.7e-99 364.8 216 79.6
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 8.0e-99 364.0 217 80.2
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.0e-98 363.6 217 80.6
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.0e-98 363.6 217 80.6
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 1.8e-98 362.8 217 80.6
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.3e-98 362.5 249 71.1
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 4.0e-98 361.7 216 79.2
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 5.2e-98 361.3 218 78.9
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.1e-97 360.1 217 79.7
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 2.0e-97 359.4 216 80.1
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 2.6e-97 359.0 217 78.8
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 4.4e-97 358.2 216 78.7
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 2.8e-96 355.5 219 76.7
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.7e-96 355.1 217 77.9
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 3.7e-96 355.1 226 75.7
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 8.2e-96 354.0 217 77.4
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 5.3e-95 351.3 182 87.4
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 9.1e-95 350.5 201 80.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.5e-94 348.6 219 74.9
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.3e-93 346.7 221 76.0
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.3e-93 346.7 201 80.6
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.7e-93 346.3 202 77.2
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 3.2e-92 342.0 242 70.7
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 4.2e-92 341.7 182 85.2
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 2.7e-91 339.0 189 83.6
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.3e-90 335.9 197 80.2
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 2.3e-90 335.9 189 82.5
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.0e-90 335.1 185 83.8
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 6.8e-90 334.3 178 84.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.4e-89 332.0 191 81.7
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 7.5e-89 330.9 191 79.6
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-88 330.1 199 78.4
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.0e-86 322.8 191 79.6
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 2.9e-85 318.9 190 80.0
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 1.9e-84 316.2 208 71.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.6e-83 313.2 198 69.7
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 4.7e-83 311.6 192 75.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 4.0e-82 308.5 198 69.7
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.0e-81 306.2 217 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 4.5e-78 295.0 188 68.6
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.5e-73 280.0 145 87.6
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 2.0e-73 279.6 145 85.5
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.8e-73 277.3 171 77.8
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 9.8e-73 277.3 171 77.8
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.3e-69 266.9 191 62.3
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 4.3e-68 261.9 133 88.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 8.9e-66 254.2 133 85.7
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 2.4e-63 246.1 133 82.7
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.5e-60 236.9 130 80.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 4.4e-57 225.3 122 80.3
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.1e-52 210.7 143 69.9
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.2e-50 201.8 125 76.0
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.6e-41 171.4 107 76.6
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.2e-38 164.1 93 80.6
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-37 160.2 89 80.9
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 6.7e-29 131.7 87 73.6
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.6e-25 119.8 83 73.5
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 7.6e-25 118.2 216 33.3
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.2e-22 110.9 231 32.9
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 2.3e-13 80.1 41 85.4
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 9.6e-12 74.7 62 59.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 4.1e-10 69.3 64 54.7
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.9e-07 60.5 42 59.5


User provided reference genes

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