Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 4.9e-94 347.8 181 100.0
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 8.5e-86 320.5 183 94.5
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 1.7e-70 269.6 181 80.7
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 7.4e-66 254.2 179 79.3
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 7.0e-64 247.7 177 78.0
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 1.6e-63 246.5 170 80.6
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 2.0e-63 246.1 177 77.4
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 3.5e-63 245.4 181 77.9
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 3.5e-63 245.4 181 77.9
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 3.8e-62 241.9 177 79.1
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 6.5e-62 241.1 182 76.9
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 1.9e-61 239.6 177 78.5
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 4.2e-61 238.4 177 78.5
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 5.5e-61 238.0 177 78.5
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 2.3e-59 232.6 182 74.2
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 1.5e-58 229.9 177 75.7
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 1.8e-48 196.4 177 70.6
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 3.5e-31 139.0 170 50.0
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 1.1e-21 107.5 196 42.3
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 7.3e-21 104.8 192 44.8
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 1.6e-12 77.0 138 36.2
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 2.8e-12 76.3 214 30.8
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 1.8e-11 73.6 94 46.8
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 3.1e-11 72.8 150 36.7
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 4.0e-11 72.4 172 33.7
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 4.0e-11 72.4 136 38.2
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 1.5e-10 70.5 184 35.9
Thhalv10015459m.g Eutrema salsugineum HOM05D012592 ORTHO05D008066 3.4e-10 69.3 186 35.5
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 4.4e-10 68.9 94 42.6
A10p33410 Brassica napus HOM05D012592 ORTHO05D008066 5.8e-10 68.6 182 35.2
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 5.8e-10 68.6 182 35.2
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 5.8e-10 68.6 77 51.9
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 7.6e-10 68.2 143 36.4
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 7.6e-10 68.2 94 47.9
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 9.9e-10 67.8 166 31.3
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 1.3e-09 67.4 93 43.0
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 1.3e-09 67.4 93 43.0
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 2.2e-09 66.6 94 41.5
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 2.9e-09 66.2 96 42.7
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 3.8e-09 65.9 153 34.0
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 3.8e-09 65.9 172 32.0
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 4.9e-09 65.5 94 42.6
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 4.9e-09 65.5 153 34.0
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.9e-09 65.5 153 34.0
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 4.9e-09 65.5 167 31.1
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 6.4e-09 65.1 150 34.0
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 6.4e-09 65.1 135 35.6
Sp6g40240 Schrenkiella parvula HOM05D012592 ORTHO05D008066 6.4e-09 65.1 187 35.3
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 8.4e-09 64.7 94 42.6
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 8.4e-09 64.7 94 43.6
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.4e-08 63.9 91 46.2
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 1.4e-08 63.9 133 36.1
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.4e-08 63.9 94 42.6
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 1.9e-08 63.5 90 46.7
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 2.4e-08 63.2 210 31.0
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 3.2e-08 62.8 96 42.7
Carub.0006s0104 Capsella rubella HOM05D012592 ORTHO05D008066 5.4e-08 62.0 184 30.4
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 5.4e-08 62.0 152 32.2
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 5.4e-08 62.0 152 32.2
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 7.1e-08 61.6 184 35.9
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 9.3e-08 61.2 93 44.1
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 1.6e-07 60.5 137 35.0
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 2.1e-07 60.1 94 41.5
C09p74320 Brassica napus HOM05D012592 ORTHO05D008066 2.7e-07 59.7 178 31.5
BolC9t60165H Brassica oleracea HOM05D012592 ORTHO05D008066 2.7e-07 59.7 178 31.5
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 3.5e-07 59.3 77 48.1
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 3.5e-07 59.3 92 41.3
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 4.6e-07 58.9 99 41.4
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 6.0e-07 58.5 90 42.2
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 6.0e-07 58.5 176 33.0
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 1.0e-06 57.8 91 39.6
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 1.0e-06 57.8 176 34.1
CARHR211150 Cardamine hirsuta HOM05D012592 ORTHO05D008066 1.3e-06 57.4 182 30.8
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 1.3e-06 57.4 93 41.9
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 1.7e-06 57.0 94 40.4
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 1.7e-06 57.0 94 42.6
HanXRQChr01g0001221 Helianthus annuus HOM05D007762 ORTHO05D008066 3.0e-06 56.2 166 33.1
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 3.0e-06 56.2 94 41.5
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 3.0e-06 56.2 255 29.4
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 3.0e-06 56.2 123 40.7
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 3.9e-06 55.8 63 55.6
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 6.6e-06 55.1 162 30.2
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 6.6e-06 55.1 189 29.1
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 8.7e-06 54.7 200 30.5


User provided reference genes

Program Settings