Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34360 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 1.4e-43 179.1 81 100.0
Carub.0004s1815 Capsella rubella HOM05D004809 ORTHO05D006732 1.0e-35 152.9 70 97.1
AL4G32520 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 2.3e-35 151.8 70 95.7
AT2G36360 Arabidopsis thaliana HOM05D004809 ORTHO05D006732 3.0e-35 151.4 70 95.7
A05p09490 Brassica napus HOM05D004809 ORTHO05D006732 3.0e-35 151.4 70 97.1
BraA05t19899Z Brassica rapa HOM05D004809 ORTHO05D006732 3.0e-35 151.4 70 97.1
BcaC02g11751 Brassica carinata HOM05D004809 ORTHO05D006732 6.8e-35 150.2 70 95.7
A05p09440 Brassica napus HOM05D004809 ORTHO05D006732 6.8e-35 150.2 70 95.7
C04p11750 Brassica napus HOM05D004809 ORTHO05D006732 6.8e-35 150.2 70 95.7
BolC4t22822H Brassica oleracea HOM05D004809 ORTHO05D006732 6.8e-35 150.2 70 95.7
CARHR130660 Cardamine hirsuta HOM05D004809 ORTHO05D006732 8.8e-35 149.8 70 94.3
Sp4g18640 Schrenkiella parvula HOM05D004809 ORTHO05D006732 2.0e-34 148.7 70 94.3
BcaB02g09358 Brassica carinata HOM05D004809 ORTHO05D006732 3.4e-34 147.9 69 95.7
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 1.7e-33 145.6 69 89.9
Thhalv10017936m.g Eutrema salsugineum HOM05D004809 ORTHO05D006732 1.7e-33 145.6 70 94.3
FvH4_5g38020 Fragaria vesca HOM05D004809 ORTHO05D006732 3.1e-32 141.4 69 87.0
FAN04G1536 Fragaria x ananassa HOM05D004809 ORTHO05D006732 3.1e-32 141.4 69 87.0
FAN08G1717 Fragaria x ananassa HOM05D004809 ORTHO05D006732 3.1e-32 141.4 69 87.0
FAN18G3489 Fragaria x ananassa HOM05D004809 ORTHO05D006732 3.1e-32 141.4 69 87.0
RcHm_v2.0_Chr1g0333111 Rosa chinensis HOM05D004809 ORTHO05D006732 3.1e-32 141.4 69 87.0
RcHm_v2.0_Chr1g0333981 Rosa chinensis HOM05D004809 ORTHO05D006732 3.1e-32 141.4 69 87.0
Hma1.2p1_0352F.1_g133010 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 4.1e-32 141.0 69 84.1
arahy.Tifrunner.gnm1.ann1.9JEX28 Arachis hypogaea HOM05D004809 ORTHO05D006732 7.0e-32 140.2 69 87.0
arahy.Tifrunner.gnm1.ann1.RW77QZ Arachis hypogaea HOM05D004809 ORTHO05D006732 7.0e-32 140.2 69 87.0
Potri.008G024700 Populus trichocarpa HOM05D004809 ORTHO05D006732 7.0e-32 140.2 69 87.0
Prupe.2G084800 Prunus persica HOM05D004809 ORTHO05D006732 7.0e-32 140.2 69 85.5
Dinv20809 Davidia involucrata HOM05D004809 ORTHO05D006732 9.2e-32 139.8 69 85.5
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 1.2e-31 139.4 68 86.8
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 1.2e-31 139.4 68 86.8
Glyma.20G187700 Glycine max HOM05D004809 ORTHO05D006732 1.6e-31 139.0 69 87.0
MD07G1067800 Malus domestica HOM05D004809 ORTHO05D006732 1.6e-31 139.0 69 84.1
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 1.6e-31 139.0 68 86.8
MD02G1248400 Malus domestica HOM05D004809 ORTHO05D006732 2.0e-31 138.7 69 85.5
Sabra08G0016600 Salix brachista HOM05D004809 ORTHO05D006732 2.0e-31 138.7 69 85.5
GSVIVG01034738001 Vitis vinifera HOM05D004809 ORTHO05D006732 2.0e-31 138.7 69 84.1
Manes.07G089701 Manihot esculenta HOM05D004809 ORTHO05D006732 2.7e-31 138.3 68 85.3
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 3.5e-31 137.9 68 85.3
QL04p042573 Quercus lobata HOM05D004809 ORTHO05D006732 3.5e-31 137.9 68 85.3
COL.COLO4_20964 Corchorus olitorius HOM05D004809 ORTHO05D006732 4.5e-31 137.5 68 85.3
Phvul.007G104300 Phaseolus vulgaris HOM05D004809 ORTHO05D006732 5.9e-31 137.1 69 85.5
Rhsim03G0105000 Rhododendron simsii HOM05D004809 ORTHO05D006732 7.8e-31 136.7 69 84.1
Lj2A29T80 Lonicera japonica HOM05D004809 ORTHO05D006732 1.0e-30 136.3 69 81.2
Ah.04g163730 Amaranthus hybridus HOM05D004809 ORTHO05D006732 1.3e-30 136.0 69 85.5
CiPaw.13G037200 Carya illinoinensis HOM05D004809 ORTHO05D006732 1.3e-30 136.0 69 84.1
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 1.3e-30 136.0 69 84.1
Aa31LG5G21540 Aethionema arabicum HOM05D004809 ORTHO05D006732 1.7e-30 135.6 88 73.9
Duzib106G1880 Durio zibethinus HOM05D004809 ORTHO05D006732 1.7e-30 135.6 68 83.8
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 1.7e-30 135.6 70 84.3
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 2.9e-30 134.8 68 83.8
TAR636G3234 Trochodendron aralioides HOM05D004809 ORTHO05D006732 3.8e-30 134.4 69 82.6
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 3.8e-30 134.4 69 82.6
Atru.chr12.976 Acer truncatum HOM05D004809 ORTHO05D006732 5.0e-30 134.0 70 84.3
EL10Ac4g08666 Beta vulgaris HOM05D004809 ORTHO05D006732 5.0e-30 134.0 69 84.1
Ca_10498_v3 Cicer arietinum L. HOM05D004809 ORTHO05D006732 5.0e-30 134.0 69 79.7
Eucgr.G02708 Eucalyptus grandis HOM05D004809 ORTHO05D006732 5.0e-30 134.0 69 85.5
MBI17_g00711_MAGBIO Magnolia biondii HOM05D004809 ORTHO05D006732 6.6e-30 133.7 69 82.6
CSS0050047 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 8.6e-30 133.3 69 81.2
ClCG05G021650 Citrullus lanatus HOM05D004809 ORTHO05D006732 8.6e-30 133.3 68 83.8
Lalb_Chr02g0151411 Lupinus albus HOM05D004809 ORTHO05D006732 8.6e-30 133.3 69 84.1
Sed0005221 Sechium edule HOM05D004809 ORTHO05D006732 8.6e-30 133.3 68 83.8
TPR.G2503 Trifolium pratense HOM05D004809 ORTHO05D006732 8.6e-30 133.3 69 79.7
Lj5g0024267 Lotus japonicus HOM05D004809 ORTHO05D006732 1.1e-29 132.9 69 84.1
CAN.G534.16 Capsicum annuum HOM05D004809 ORTHO05D006732 1.5e-29 132.5 68 82.4
Psat6g176720 Pisum sativum HOM05D004809 ORTHO05D006732 1.9e-29 132.1 69 81.2
DCAR_028402 Daucus carota HOM05D004809 ORTHO05D006732 2.5e-29 131.7 68 80.9
SalBow6G1224 Salvia bowleyana HOM05D004809 ORTHO05D006732 3.3e-29 131.3 68 80.9
Aqoxy4G02860 Aquilegia oxysepala HOM05D004809 ORTHO05D006732 4.3e-29 131.0 69 82.6
MELO3C012363.2 Cucumis melo HOM05D004809 ORTHO05D006732 4.3e-29 131.0 68 82.4
CsaV3_5G035620 Cucumis sativus L. HOM05D004809 ORTHO05D006732 4.3e-29 131.0 68 82.4
Medtr1g492850 Medicago truncatula HOM05D004809 ORTHO05D006732 5.6e-29 130.6 69 76.8
Nn6g35016 Nelumbo nucifera HOM05D004809 ORTHO05D006732 5.6e-29 130.6 68 80.9
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 9.5e-29 129.8 70 81.4
Sopen11g003210 Solanum pennellii HOM05D004809 ORTHO05D006732 9.5e-29 129.8 68 79.4
Peaxi162Scf00244g01123 Petunia axillaris HOM05D004809 ORTHO05D006732 1.2e-28 129.4 68 80.9
Migut.F00896 Erythranthe guttata HOM05D004809 ORTHO05D006732 1.6e-28 129.0 68 77.9
Solyc11g007320.2 Solanum lycopersicum HOM05D004809 ORTHO05D006732 3.6e-28 127.9 68 77.9
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 4.7e-28 127.5 68 77.9
Nitab4.5_0000962g0070 Nicotiana tabacum HOM05D004809 ORTHO05D006732 4.7e-28 127.5 68 79.4
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 8.0e-28 126.7 70 75.7
unitig_0.g851 Utricularia gibba HOM05D004809 ORTHO05D006732 1.0e-27 126.3 68 77.9
Lsat_1_v5_gn_9_14041 Lactuca sativa HOM05D004809 ORTHO05D006732 2.3e-27 125.2 68 76.5
Lsat_1_v5_gn_7_3121 Lactuca sativa HOM05D003089 ORTHO05D006732 4.0e-27 124.4 73 75.3
HanXRQChr05g0146831 Helianthus annuus HOM05D004809 ORTHO05D006732 5.2e-27 124.0 70 74.3
Sc06g0002220 Simmondsia chinensis HOM05D004809 ORTHO05D006732 8.9e-27 123.2 68 76.5
Lsat_1_v5_gn_3_126940 Lactuca sativa HOM05D004809 ORTHO05D006732 1.5e-26 122.5 68 75.0
Cc02_g09980 Coffea canephora HOM05D004809 ORTHO05D006732 9.8e-26 119.8 68 75.0
Pp3c12_16110 Physcomitrium patens HOM05D004809 ORTHO05D006732 9.8e-26 119.8 69 69.6
Pp3c12_16113 Physcomitrium patens HOM05D004809 ORTHO05D006732 9.8e-26 119.8 69 69.6
CsaV3_7G016260 Cucumis sativus L. HOM05D004809 ORTHO05D006732 3.7e-25 117.9 68 75.0
Mapoly0052s0089 Marchantia polymorpha HOM05D004809 ORTHO05D006732 8.3e-25 116.7 68 67.6
ATR0820G085 Amborella trichopoda HOM05D004809 ORTHO05D006732 1.8e-24 115.5 68 70.6
SHI21283 Sapria himalayana HOM05D004809 ORTHO05D006732 1.8e-24 115.5 92 62.0
SMO174G0255 Selaginella moellendorffii HOM05D004809 ORTHO05D006732 1.8e-24 115.5 69 68.1
AUR62041546 Chenopodium quinoa HOM05D004809 ORTHO05D006732 9.2e-24 113.2 104 54.8
SGA_v2.0_scaffold62G21351 Striga asiatica HOM05D004809 ORTHO05D006732 1.2e-23 112.8 99 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3607 Anthoceros agrestis HOM05D004809 ORTHO05D006732 2.0e-23 112.1 70 61.4
Lsat_1_v5_gn_4_48181 Lactuca sativa HOM05D004809 ORTHO05D006732 2.0e-23 112.1 57 80.7
Lsat_1_v5_gn_1_19021 Lactuca sativa HOM05D004809 ORTHO05D006732 5.9e-23 110.5 53 86.8
Oeu015034.1 Olea europaea HOM05D004809 ORTHO05D006732 5.0e-22 107.5 53 84.9
Oeu030502.1 Olea europaea HOM05D004809 ORTHO05D006732 1.2e-20 102.8 61 73.8
Actinidia18582 Actinidia chinensis HOM05D004809 ORTHO05D006732 3.7e-17 91.3 46 78.3
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 4.6e-15 84.3 107 39.3
HPP92_026096 Vanilla planifolia HOM05D004809 ORTHO05D006732 7.8e-15 83.6 45 73.3
VMungo0720G0319 Vigna mungo HOM05D004809 ORTHO05D006732 8.6e-14 80.1 42 78.6
FvH4_5g38190 Fragaria vesca HOM05D004809 ORTHO05D006732 1.1e-13 79.7 45 77.8
CBR_g30411 Chara braunii HOM05D004809 ORTHO05D006732 3.3e-13 78.2 53 56.6
PGSC0003DMG400019479 Solanum tuberosum HOM05D004809 ORTHO05D006732 5.2e-11 70.9 112 34.8
MCO03G163 Micromonas commoda HOM05D004809 ORTHO05D006732 2.2e-09 65.5 61 41.0
Cpa.g.sc19.17 Carica papaya HOM05D004809 ORTHO05D006732 2.7e-07 58.5 45 62.2


User provided reference genes

Program Settings