Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34350 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 3.0e-22 107.8 63 100.0
AL4G32520 Arabidopsis lyrata HOM05D004809 ORTHO05D006732 1.0e-17 92.8 53 90.6
AT2G36360 Arabidopsis thaliana HOM05D004809 ORTHO05D006732 1.0e-17 92.8 53 90.6
A05p09400 Brassica napus HOM05D004809 ORTHO05D006732 2.2e-17 91.7 57 84.2
A05p09440 Brassica napus HOM05D004809 ORTHO05D006732 1.4e-16 89.0 53 84.9
A05p09490 Brassica napus HOM05D004809 ORTHO05D006732 1.4e-16 89.0 53 84.9
C04p11750 Brassica napus HOM05D004809 ORTHO05D006732 1.4e-16 89.0 53 84.9
BcaB02g09358 Brassica carinata HOM05D004809 ORTHO05D006732 5.5e-16 87.0 53 83.0
BcaC02g11751 Brassica carinata HOM05D004809 ORTHO05D006732 5.5e-16 87.0 53 83.0
BolC4t22822H Brassica oleracea HOM05D004809 ORTHO05D006732 5.5e-16 87.0 53 83.0
Sp4g18640 Schrenkiella parvula HOM05D004809 ORTHO05D006732 1.2e-15 85.9 53 83.0
Thhalv10017936m.g Eutrema salsugineum HOM05D004809 ORTHO05D006732 2.1e-15 85.1 53 81.1
QL04p042558 Quercus lobata HOM05D004809 ORTHO05D006732 7.9e-15 83.2 53 77.4
arahy.Tifrunner.gnm1.ann1.9JEX28 Arachis hypogaea HOM05D004809 ORTHO05D006732 8.7e-14 79.7 52 76.9
arahy.Tifrunner.gnm1.ann1.RW77QZ Arachis hypogaea HOM05D004809 ORTHO05D006732 8.7e-14 79.7 52 76.9
Lj5g0024267 Lotus japonicus HOM05D004809 ORTHO05D006732 1.9e-13 78.6 53 75.5
Actinidia18582 Actinidia chinensis HOM05D004809 ORTHO05D006732 2.5e-13 78.2 53 73.6
Ciclev10031499m.g Citrus clementina HOM05D004809 ORTHO05D006732 2.5e-13 78.2 53 73.6
FvH4_5g38020 Fragaria vesca HOM05D004809 ORTHO05D006732 4.3e-13 77.4 53 71.7
Glyma.20G187700 Glycine max HOM05D004809 ORTHO05D006732 4.3e-13 77.4 53 75.5
Medtr1g492850 Medicago truncatula HOM05D004809 ORTHO05D006732 4.3e-13 77.4 53 73.6
Psat6g176720 Pisum sativum HOM05D004809 ORTHO05D006732 4.3e-13 77.4 53 73.6
Aqoxy4G02860 Aquilegia oxysepala HOM05D004809 ORTHO05D006732 5.7e-13 77.0 52 75.0
CSS0050047 Camellia sinensis var. sinensis HOM05D004809 ORTHO05D006732 5.7e-13 77.0 52 75.0
Cpa.g.c36770 Carica papaya HOM05D004809 ORTHO05D006732 7.4e-13 76.6 54 70.4
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 7.4e-13 76.6 53 73.6
Ca_10498_v3 Cicer arietinum L. HOM05D004809 ORTHO05D006732 9.7e-13 76.3 53 73.6
DCAR_028402 Daucus carota HOM05D004809 ORTHO05D006732 9.7e-13 76.3 52 76.9
CiPaw.13G037200 Carya illinoinensis HOM05D004809 ORTHO05D006732 1.3e-12 75.9 53 73.6
Nitab4.5_0005390g0010 Nicotiana tabacum HOM05D004809 ORTHO05D006732 1.3e-12 75.9 53 71.7
VMungo0720G0771 Vigna mungo HOM05D004809 ORTHO05D006732 1.3e-12 75.9 53 71.7
Gohir.A12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 1.6e-12 75.5 53 71.7
Gohir.D12G091000 Gossypium hirsutum HOM05D004809 ORTHO05D006732 1.6e-12 75.5 53 71.7
Gorai.008G098400 Gossypium raimondii HOM05D004809 ORTHO05D006732 1.6e-12 75.5 53 71.7
CAN.G534.16 Capsicum annuum HOM05D004809 ORTHO05D006732 2.2e-12 75.1 53 69.8
Phvul.007G104300 Phaseolus vulgaris HOM05D004809 ORTHO05D006732 2.2e-12 75.1 52 73.1
Peaxi162Scf00244g01123 Petunia axillaris HOM05D004809 ORTHO05D006732 2.8e-12 74.7 53 71.7
PGR142G2585 Punica granatum HOM05D004809 ORTHO05D006732 2.8e-12 74.7 53 66.0
RcHm_v2.0_Chr1g0333111 Rosa chinensis HOM05D004809 ORTHO05D006732 2.8e-12 74.7 53 67.9
Thecc.10G104900 Theobroma cacao HOM05D004809 ORTHO05D006732 2.8e-12 74.7 53 73.6
TPR.G2503 Trifolium pratense HOM05D004809 ORTHO05D006732 2.8e-12 74.7 53 69.8
ClCG05G021650 Citrullus lanatus HOM05D004809 ORTHO05D006732 4.8e-12 73.9 53 73.6
MD02G1248400 Malus domestica HOM05D004809 ORTHO05D006732 4.8e-12 73.9 53 73.6
Nitab4.5_0000962g0070 Nicotiana tabacum HOM05D004809 ORTHO05D006732 4.8e-12 73.9 53 69.8
MELO3C012363.2 Cucumis melo HOM05D004809 ORTHO05D006732 6.3e-12 73.6 53 71.7
Hma1.2p1_0352F.1_g133010 Hydrangea macrophylla HOM05D004809 ORTHO05D006732 8.2e-12 73.2 53 73.6
MD07G1067800 Malus domestica HOM05D004809 ORTHO05D006732 8.2e-12 73.2 53 73.6
Sopen11g003210 Solanum pennellii HOM05D004809 ORTHO05D006732 8.2e-12 73.2 53 69.8
AUR62035490 Chenopodium quinoa HOM05D004809 ORTHO05D006732 1.1e-11 72.8 52 67.3
PGSC0003DMG400019479 Solanum tuberosum HOM05D004809 ORTHO05D006732 1.1e-11 72.8 53 67.9
Oeu015034.1 Olea europaea HOM05D004809 ORTHO05D006732 1.4e-11 72.4 52 69.2
Duzib106G1880 Durio zibethinus HOM05D004809 ORTHO05D006732 1.8e-11 72.0 53 71.7
Hund06768 Selenicereus undatus HOM05D004809 ORTHO05D006732 1.8e-11 72.0 54 64.8
EL10Ac4g08666 Beta vulgaris HOM05D004809 ORTHO05D006732 2.4e-11 71.6 52 65.4
Potri.008G024700 Populus trichocarpa HOM05D004809 ORTHO05D006732 2.4e-11 71.6 53 71.7
Atru.chr12.976 Acer truncatum HOM05D004809 ORTHO05D006732 3.1e-11 71.2 53 64.2
Ah.04g163730 Amaranthus hybridus HOM05D004809 ORTHO05D006732 3.1e-11 71.2 52 65.4
HanXRQChr05g0146831 Helianthus annuus HOM05D004809 ORTHO05D006732 3.1e-11 71.2 53 67.9
Manes.07G089701 Manihot esculenta HOM05D004809 ORTHO05D006732 4.1e-11 70.9 53 71.7
CANSAT56G2003 Cannabis sativa HOM05D004809 ORTHO05D006732 5.3e-11 70.5 53 67.9
Sed0005221 Sechium edule HOM05D004809 ORTHO05D006732 5.3e-11 70.5 53 71.7
Prupe.2G084800 Prunus persica HOM05D004809 ORTHO05D006732 6.9e-11 70.1 53 67.9
Sabra08G0016600 Salix brachista HOM05D004809 ORTHO05D006732 9.1e-11 69.7 53 69.8
BraA05t19899Z Brassica rapa HOM05D004809 ORTHO05D006732 1.2e-10 69.3 43 83.7
Sc06g0002220 Simmondsia chinensis HOM05D004809 ORTHO05D006732 1.5e-10 68.9 52 59.6
ECA232G3125 Erigeron canadensis HOM05D004809 ORTHO05D006732 2.0e-10 68.6 53 66.0
Solyc11g007320.2 Solanum lycopersicum HOM05D004809 ORTHO05D006732 2.0e-10 68.6 53 66.0
ATR0820G085 Amborella trichopoda HOM05D004809 ORTHO05D006732 2.6e-10 68.2 50 66.0
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 2.6e-10 68.2 53 64.2
Lalb_Chr02g0151411 Lupinus albus HOM05D004809 ORTHO05D006732 3.4e-10 67.8 54 68.5
SGA_v2.0_scaffold62G21351 Striga asiatica HOM05D004809 ORTHO05D006732 5.9e-10 67.0 52 63.5
GSVIVG01034738001 Vitis vinifera HOM05D004809 ORTHO05D006732 5.9e-10 67.0 55 63.6
Oeu030502.1 Olea europaea HOM05D004809 ORTHO05D006732 1.0e-09 66.2 51 60.8
Migut.F00896 Erythranthe guttata HOM05D004809 ORTHO05D006732 1.3e-09 65.9 52 63.5
FAN08G1717 Fragaria x ananassa HOM05D004809 ORTHO05D006732 2.2e-09 65.1 69 53.6
vmacro07229 Vaccinium macrocarpon HOM05D004809 ORTHO05D006732 5.0e-09 63.9 64 54.7
unitig_0.g851 Utricularia gibba HOM05D004809 ORTHO05D006732 8.5e-09 63.2 52 55.8
Mapoly0052s0089 Marchantia polymorpha HOM05D004809 ORTHO05D006732 1.9e-08 62.0 49 59.2
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 3.2e-08 61.2 51 60.8
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 9.4e-08 59.7 51 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3607 Anthoceros agrestis HOM05D004809 ORTHO05D006732 4.6e-07 57.4 49 61.2
CBR_g30411 Chara braunii HOM05D004809 ORTHO05D006732 3.9e-06 54.3 50 56.0


User provided reference genes

Program Settings