Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 8.1e-205 716.8 362 100.0
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 7.6e-195 683.7 364 94.8
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.5e-192 674.9 364 92.6
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 2.3e-191 672.2 364 92.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.2e-187 659.8 364 90.7
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.2e-187 659.8 364 91.8
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.4e-185 652.9 364 90.4
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.2e-185 651.7 364 89.3
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.2e-184 649.8 364 89.0
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.7e-184 648.7 364 89.3
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.0e-183 645.2 364 88.7
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 5.1e-183 644.4 364 89.0
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.8e-170 601.7 366 81.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.5e-169 597.8 367 81.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.1e-153 547.0 363 73.8
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.3e-150 535.4 363 73.3
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 9.7e-150 533.9 363 72.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.8e-149 532.3 365 72.3
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 2.0e-147 526.2 360 71.1
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.7e-147 525.8 362 69.9
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.7e-147 525.8 363 71.6
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 7.7e-147 524.2 362 70.4
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.9e-146 522.3 366 70.8
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 3.8e-146 521.9 360 69.7
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 6.5e-146 521.2 363 70.0
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.5e-145 519.2 361 70.4
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-145 518.8 361 70.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.7e-144 515.0 360 68.6
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.0e-144 514.2 361 69.5
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.4e-143 513.5 360 68.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.4e-143 513.5 360 70.6
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.8e-143 513.1 419 63.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 3.0e-143 512.3 371 67.1
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 5.2e-143 511.5 371 66.6
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.4e-142 508.8 361 68.4
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 5.7e-142 508.1 361 68.4
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 7.5e-142 507.7 371 66.8
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.3e-141 506.9 362 68.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.3e-141 506.9 361 67.9
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 4.8e-141 505.0 361 67.9
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.2e-139 500.4 360 67.8
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.6e-139 500.0 360 68.3
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 7.7e-139 497.7 368 66.3
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 6.5e-138 494.6 364 66.5
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 6.5e-138 494.6 355 66.5
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 8.5e-138 494.2 362 64.6
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 3.2e-137 492.3 360 64.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 3.2e-137 492.3 363 66.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 4.2e-137 491.9 365 66.0
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.2e-137 491.9 362 67.4
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.5e-137 491.5 362 64.6
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 7.2e-137 491.1 363 65.3
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.2e-136 490.3 362 64.1
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.1e-136 489.6 362 65.7
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 6.1e-136 488.0 356 66.6
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 6.1e-136 488.0 372 64.2
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.0e-135 487.3 360 65.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.0e-135 487.3 363 65.6
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.4e-135 486.9 349 67.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.3e-135 486.1 367 65.9
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.3e-135 486.1 367 65.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 6.8e-135 484.6 362 66.6
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.2e-134 483.8 367 65.7
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 5.7e-134 481.5 356 64.9
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 7.5e-134 481.1 361 64.3
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.7e-133 479.9 362 65.5
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 4.9e-133 478.4 368 66.8
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.3e-133 477.6 393 60.8
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 8.3e-133 477.6 362 64.1
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 8.3e-133 477.6 361 67.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.4e-132 476.9 356 68.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 3.1e-132 475.7 368 64.9
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 3.5e-131 472.2 360 65.3
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 4.5e-131 471.9 363 64.7
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.5e-131 471.9 382 61.8
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.7e-130 469.9 386 60.9
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.7e-130 469.9 356 66.0
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.3e-130 469.5 382 61.5
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.9e-130 469.2 393 61.1
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 8.6e-130 467.6 356 64.9
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.6e-130 467.6 382 61.3
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.6e-129 464.9 362 63.8
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-128 463.8 380 61.8
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.1e-128 463.0 360 61.9
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 4.0e-127 458.8 322 68.6
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 8.9e-127 457.6 365 63.6
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.6e-123 446.8 351 61.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.6e-123 446.8 370 61.1
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 2.3e-122 443.0 369 60.7
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 3.9e-122 442.2 363 60.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.1e-121 440.7 353 61.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 7.3e-121 438.0 322 65.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-120 437.2 357 61.3
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.2e-120 437.2 309 67.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.8e-120 436.0 315 68.3
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 8.0e-120 434.5 364 61.8
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 8.0e-120 434.5 364 61.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 8.0e-120 434.5 364 59.9
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.0e-119 432.2 360 59.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.8e-119 431.4 363 60.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 6.8e-119 431.4 361 61.8
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 3.2e-116 422.5 291 68.7
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.6e-114 414.8 295 69.8
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.6e-114 414.8 354 59.3
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 6.2e-112 408.3 296 67.2
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 5.8e-110 401.7 296 64.2
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 3.2e-108 396.0 292 66.1
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.6e-107 392.1 357 57.4
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.6e-106 387.9 382 55.0
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.2e-101 373.2 280 66.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.4e-95 354.0 286 60.1
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 9.9e-94 347.8 349 51.6
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.2e-93 346.7 360 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 4.9e-93 345.5 362 48.3
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 6.4e-93 345.1 363 51.8
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.7e-91 339.7 355 53.0
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 7.8e-91 338.2 341 49.6
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.5e-89 334.0 360 50.6
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.9e-89 333.6 332 49.7
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.5e-89 333.2 363 51.2
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 4.3e-89 332.4 366 51.4
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 7.3e-89 331.6 311 52.1
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.9e-82 309.3 270 58.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.1e-59 232.3 152 71.7
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 3.1e-55 219.9 329 38.9
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 7.9e-51 205.3 103 100.0
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.5e-45 185.7 135 63.7
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.3e-42 177.2 316 35.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 6.3e-40 169.1 138 65.9
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.5e-38 162.9 160 56.2
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.7e-35 152.9 137 56.2
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 6.1e-35 152.5 370 32.2
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.9e-29 133.7 112 59.8
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.7e-27 126.3 199 37.2
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 8.8e-26 122.1 350 28.6
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.4e-25 119.8 80 75.0
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.8e-25 118.6 85 67.1
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-24 117.5 85 65.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.8e-24 116.3 87 62.1
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-23 114.4 86 62.8
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 5.5e-20 102.8 87 64.4
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-18 96.7 78 59.0
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 5.2e-18 96.3 104 54.8
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.8e-18 95.9 78 59.0
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.9e-18 95.5 100 50.0
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-17 94.7 77 58.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-17 94.7 77 58.4
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-17 94.0 77 58.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.4e-17 93.6 77 58.4
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.4e-17 93.2 77 57.1
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 4.4e-17 93.2 106 45.3
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.7e-17 92.8 78 56.4
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 9.8e-17 92.0 106 45.3
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.7e-16 90.1 70 58.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.3e-16 89.0 78 52.6
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.0e-13 82.0 45 84.4
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 8.6e-13 79.0 73 54.8
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 3.3e-12 77.0 58 63.8
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 9.5e-12 75.5 55 67.3
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-10 72.0 55 65.5
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-10 71.6 86 46.5
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 8.3e-08 62.4 59 52.5
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 8.3e-08 62.4 67 53.7
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-07 61.6 39 71.8
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-07 61.2 47 63.8
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 1.6e-06 58.2 39 66.7
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-06 57.8 38 65.8


User provided reference genes

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