Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 2.0e-256 888.6 469 100.0
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.0e-239 833.2 469 93.6
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 2.1e-237 825.5 469 91.9
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 3.6e-237 824.7 469 91.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.7e-237 824.3 470 91.5
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.2e-235 819.7 469 91.0
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.3e-234 816.2 469 91.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-234 815.8 469 90.8
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.7e-234 815.8 469 90.6
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 2.8e-234 815.1 469 90.6
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 4.8e-234 814.3 469 90.8
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.4e-233 812.0 469 91.3
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.1e-233 811.6 471 91.1
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.3e-231 806.2 469 90.2
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.1e-229 798.9 495 85.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 2.1e-229 798.9 463 90.9
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.4e-228 796.2 469 89.3
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 6.6e-215 750.7 409 97.3
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.3e-210 733.8 462 84.0
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 8.1e-197 690.6 473 78.4
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 9.9e-195 683.7 464 76.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 7.1e-193 677.6 443 78.8
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.5e-190 669.1 482 74.3
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 9.5e-190 667.2 471 73.7
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.6e-189 666.4 471 74.3
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 2.1e-189 666.0 470 76.2
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.1e-188 663.7 465 75.3
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.4e-188 662.5 469 73.6
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.5e-187 659.8 469 73.3
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.0e-187 659.4 448 77.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.0e-187 659.4 471 74.9
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.4e-187 658.7 473 74.4
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 4.4e-187 658.3 444 77.9
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 7.6e-187 657.5 449 77.1
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.6e-187 657.5 462 75.8
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 2.2e-186 656.0 473 73.8
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.9e-186 655.6 471 74.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 6.4e-186 654.4 461 75.3
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.9e-185 652.9 473 73.2
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.9e-185 652.9 459 76.0
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 2.4e-185 652.5 448 76.8
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.4e-185 652.5 444 76.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 4.2e-185 651.7 442 78.1
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 4.2e-185 651.7 471 74.5
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.2e-184 650.2 459 75.8
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.7e-184 649.0 473 73.6
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 3.5e-184 648.7 469 74.8
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 6.0e-184 647.9 477 72.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 7.8e-184 647.5 470 74.7
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.0e-183 647.1 466 74.5
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.3e-183 646.7 469 74.4
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.7e-183 646.4 485 71.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.7e-183 646.4 509 70.3
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 3.0e-183 645.6 475 73.1
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 8.7e-183 644.0 476 72.9
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 8.7e-183 644.0 463 73.4
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.9e-182 642.9 467 72.8
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.9e-182 642.9 469 73.3
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.3e-182 642.1 464 73.7
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 4.3e-182 641.7 436 77.8
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 5.6e-182 641.3 469 72.1
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 7.3e-182 641.0 469 73.1
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 7.3e-182 641.0 469 72.9
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 7.3e-182 641.0 463 73.0
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 9.6e-182 640.6 471 72.8
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.2e-181 640.2 473 73.8
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.1e-181 639.4 444 74.3
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 3.6e-181 638.6 467 73.7
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 4.7e-181 638.3 468 72.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.4e-180 636.7 453 73.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.4e-180 636.0 470 71.7
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.0e-180 635.2 470 73.2
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 6.9e-180 634.4 501 69.1
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 4.4e-179 631.7 443 74.9
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 9.9e-179 630.6 464 73.1
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.3e-178 630.2 450 74.7
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.9e-178 629.0 444 75.0
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.8e-178 628.6 472 71.0
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 3.8e-178 628.6 469 73.6
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.9e-177 626.3 464 70.5
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.9e-177 626.3 459 73.0
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 3.5e-176 622.1 461 72.5
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 7.8e-176 620.9 459 71.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 3.9e-175 618.6 459 71.2
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 5.1e-175 618.2 479 70.6
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.5e-174 616.7 409 79.2
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.4e-172 610.1 399 80.5
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 9.0e-172 607.4 469 69.7
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.5e-171 606.7 456 70.8
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 4.5e-171 605.1 445 73.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 9.9e-171 604.0 484 67.6
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 4.9e-170 601.7 461 71.4
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 7.9e-168 594.3 438 72.4
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 4.0e-164 582.0 439 69.5
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 9.0e-164 580.9 549 60.3
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 4.5e-163 578.6 424 74.5
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.9e-161 573.2 423 71.2
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 7.9e-160 567.8 413 73.1
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.4e-158 561.2 422 72.0
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 8.2e-157 557.8 446 67.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.8e-156 556.6 394 75.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 4.2e-153 545.4 385 71.9
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.3e-151 540.4 409 71.4
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.5e-150 537.0 423 66.9
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.0e-146 524.2 394 72.8
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.8e-132 476.9 434 59.2
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 2.2e-130 469.9 339 76.1
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.0e-127 461.1 465 59.8
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.8e-127 460.3 360 68.1
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.0e-123 446.8 427 61.8
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 5.9e-123 445.3 329 69.6
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 6.5e-122 441.8 434 57.4
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.5e-121 440.7 430 57.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.2e-114 416.8 327 71.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 3.5e-99 366.3 388 55.9
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.2e-96 357.8 251 76.1
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.3e-77 294.7 230 71.3
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.1e-76 288.9 202 75.7
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.1e-76 288.9 235 68.5
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.6e-72 277.7 195 74.4
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.9e-66 256.5 204 67.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.5e-65 253.8 218 61.9
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 3.3e-57 226.9 147 75.5
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.4e-54 216.9 182 67.0
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.9e-53 213.8 461 35.4
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 9.3e-44 182.2 122 71.3
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.4e-36 158.3 142 62.7
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.2e-36 156.8 137 63.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 9.0e-31 139.0 102 68.6
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 2.0e-30 137.9 275 38.5
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 7.2e-28 129.4 131 61.8
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 7.2e-28 129.4 158 53.8
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 9.4e-28 129.0 131 61.1
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.2e-27 128.6 275 36.7
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-27 127.9 131 61.1
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-27 127.9 131 61.1
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 2.1e-27 127.9 131 61.1
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 2.7e-27 127.5 131 61.1
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 3.6e-27 127.1 131 60.3
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.8e-26 122.5 139 51.8
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.0e-25 121.3 103 65.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-25 120.9 137 58.4
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 5.7e-25 119.8 133 58.6
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 9.7e-25 119.0 101 64.4
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 9.1e-23 112.5 100 63.0
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.4e-20 105.1 62 79.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 9.4e-20 102.4 132 51.5
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.6e-19 101.7 111 59.5
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-18 99.0 108 61.1
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 9.7e-17 92.4 72 72.2
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 8.2e-16 89.4 84 57.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 4.1e-15 87.0 126 47.6
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 5.3e-15 86.7 131 46.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 5.5e-12 76.6 75 57.3
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.6e-11 75.1 46 71.7
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.6e-11 75.1 46 71.7
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 3.6e-11 73.9 49 81.6
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 6.1e-11 73.2 93 46.2
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 6.1e-11 73.2 71 53.5
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 8.0e-11 72.8 166 36.1
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 3.0e-10 70.9 64 64.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 8.8e-10 69.3 90 52.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.5e-09 68.6 177 32.8
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 6.3e-08 63.2 47 61.7
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 8.2e-08 62.8 44 77.3
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 2.4e-07 61.2 103 41.7
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 3.1e-07 60.8 48 68.8
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.1e-07 60.5 46 73.9


User provided reference genes

Program Settings