Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 6.6e-64 247.3 132 100.0
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 1.3e-59 233.0 134 93.3
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 7.9e-57 223.8 134 88.1
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 1.0e-56 223.4 134 89.6
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 3.0e-56 221.9 134 89.6
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 3.0e-56 221.9 134 89.6
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 8.7e-56 220.3 134 88.8
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 2.5e-55 218.8 134 88.1
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 9.6e-55 216.9 132 88.6
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 2.1e-54 215.7 135 88.1
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 1.2e-52 209.9 129 88.4
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 2.9e-43 178.7 131 72.5
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 2.1e-41 172.6 126 73.0
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 3.1e-37 158.7 123 67.5
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 7.6e-36 154.1 124 62.9
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 1.3e-35 153.3 124 62.9
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 2.2e-35 152.5 129 65.9
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 6.5e-35 151.0 128 63.3
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 6.5e-35 151.0 126 64.3
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 1.1e-34 150.2 129 63.6
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 9.3e-34 147.1 121 66.9
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 3.6e-33 145.2 141 56.7
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 4.6e-33 144.8 128 64.8
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 4.6e-33 144.8 123 63.4
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 3.0e-32 142.1 128 59.4
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 3.0e-32 142.1 125 59.2
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 3.9e-32 141.7 127 61.4
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 1.1e-31 140.2 130 59.2
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 1.9e-31 139.4 129 61.2
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.9e-31 139.4 127 60.6
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.9e-31 139.4 123 62.6
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 1.9e-31 139.4 120 60.0
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 3.3e-31 138.7 128 61.7
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 5.7e-31 137.9 127 59.1
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 7.4e-31 137.5 127 59.1
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 1.3e-30 136.7 124 60.5
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 1.7e-30 136.3 129 56.6
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 2.2e-30 136.0 126 57.1
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 2.2e-30 136.0 124 59.7
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.2e-30 136.0 135 57.8
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.2e-30 136.0 131 58.8
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 2.2e-30 136.0 111 65.8
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 3.7e-30 135.2 122 57.4
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 6.3e-30 134.4 128 60.2
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 6.3e-30 134.4 127 59.1
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 6.3e-30 134.4 129 59.7
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 8.2e-30 134.0 135 55.6
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 8.2e-30 134.0 127 58.3
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 1.1e-29 133.7 129 57.4
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 1.1e-29 133.7 127 55.1
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 1.1e-29 133.7 126 57.1
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 1.1e-29 133.7 123 61.0
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 1.4e-29 133.3 131 57.3
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 1.4e-29 133.3 129 59.7
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 1.4e-29 133.3 137 56.2
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 1.8e-29 132.9 134 55.2
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 2.4e-29 132.5 127 52.0
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 2.4e-29 132.5 127 56.7
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 2.4e-29 132.5 127 55.1
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 4.1e-29 131.7 128 55.5
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 4.1e-29 131.7 127 55.1
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 4.1e-29 131.7 127 58.3
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 4.1e-29 131.7 127 54.3
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 5.3e-29 131.3 127 51.2
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 6.9e-29 131.0 129 53.5
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 6.9e-29 131.0 127 53.5
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 9.1e-29 130.6 127 51.2
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 9.1e-29 130.6 146 55.5
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 1.5e-28 129.8 129 56.6
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 1.5e-28 129.8 127 56.7
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 3.4e-28 128.6 143 55.2
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 3.4e-28 128.6 127 56.7
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 4.5e-28 128.3 127 55.9
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 5.9e-28 127.9 127 54.3
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 5.9e-28 127.9 127 55.9
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 7.7e-28 127.5 127 54.3
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 1.0e-27 127.1 125 56.0
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 1.7e-27 126.3 124 58.1
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 3.8e-27 125.2 125 51.2
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 5.0e-27 124.8 130 53.1
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 1.1e-26 123.6 127 52.0
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.9e-26 122.9 126 51.6
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 3.2e-26 122.1 123 53.7
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 3.2e-26 122.1 123 53.7
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 3.2e-26 122.1 123 53.7
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 5.5e-26 121.3 127 52.8
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 2.1e-25 119.4 128 50.8
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 4.7e-25 118.2 127 50.4
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 6.1e-25 117.9 122 50.0
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 6.1e-25 117.9 122 50.0
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 6.1e-25 117.9 161 43.5
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 1.0e-24 117.1 122 51.6
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 1.0e-24 117.1 126 50.0
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 1.8e-24 116.3 159 45.3
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 2.0e-23 112.8 100 65.0
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 2.0e-23 112.8 100 65.0
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.6e-23 112.5 98 63.3
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 3.3e-23 112.1 128 48.4
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 1.3e-22 110.2 112 53.6
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 8.2e-22 107.5 99 55.6
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 4.1e-21 105.1 79 69.6
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 1.2e-20 103.6 94 64.9
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 2.0e-20 102.8 94 64.9
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 5.9e-20 101.3 76 61.8
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 7.7e-20 100.9 94 63.8
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 1.3e-19 100.1 88 67.0
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 2.2e-19 99.4 84 61.9
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.4e-18 96.7 115 47.8
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 1.9e-18 96.3 115 47.0
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 1.6e-17 93.2 77 57.1
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 2.1e-17 92.8 76 60.5
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 2.0e-15 86.3 101 45.5
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 3.3e-15 85.5 119 44.5
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 3.7e-14 82.0 49 85.7
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 4.8e-14 81.6 119 42.0
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 4.5e-12 75.1 114 40.4
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 5.9e-12 74.7 111 46.8
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 3.2e-10 68.9 106 37.7
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 2.7e-09 65.9 92 47.8
BolC2t06414H Brassica oleracea HOM05D033078 ORTHO05D041034 3.3e-07 58.9 64 56.2
A06p31240 Brassica napus HOM05D033078 ORTHO05D041034 7.5e-07 57.8 64 54.7


User provided reference genes

Program Settings