Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-82 309.7 193 100.0
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-82 309.7 193 100.0
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-82 309.7 193 100.0
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 7.9e-82 307.4 193 99.5
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.3e-81 306.6 193 99.5
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 3.6e-66 255.4 165 99.4
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 7.3e-11 71.6 36 94.4
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-10 70.5 36 91.7
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-10 70.5 36 91.7
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-10 70.5 36 91.7
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.6e-10 70.5 36 91.7
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.6e-10 70.5 36 91.7
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-10 69.3 36 88.9
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 2.3e-09 66.6 36 86.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 5.2e-09 65.5 36 86.1
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 6.8e-09 65.1 36 86.1
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.4e-08 62.8 36 77.8
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 4.4e-08 62.4 36 77.8
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.8e-08 62.0 36 77.8
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 5.8e-08 62.0 36 77.8
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 7.6e-08 61.6 36 77.8
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 7.6e-08 61.6 35 82.9
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 9.9e-08 61.2 36 77.8
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 9.9e-08 61.2 36 75.0
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 9.9e-08 61.2 36 75.0
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.3e-07 60.8 38 73.7
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.3e-07 60.8 35 77.1
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.3e-07 60.8 35 80.0
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.7e-07 60.5 114 42.1
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 1.7e-07 60.5 36 75.0
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.7e-07 60.5 36 75.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.7e-07 60.5 35 80.0
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.7e-07 60.5 35 80.0
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 2.2e-07 60.1 36 75.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 2.2e-07 60.1 35 80.0
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.2e-07 60.1 35 80.0
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.2e-07 60.1 36 77.8
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.2e-07 60.1 35 80.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.2e-07 60.1 35 80.0
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 2.2e-07 60.1 35 77.1
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 2.2e-07 60.1 35 77.1
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.7e-07 59.3 35 77.1
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.7e-07 59.3 35 77.1
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.7e-07 59.3 35 77.1
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.7e-07 59.3 36 75.0
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 3.7e-07 59.3 36 75.0
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 4.9e-07 58.9 35 77.1
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 4.9e-07 58.9 110 46.4
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 4.9e-07 58.9 35 77.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 4.9e-07 58.9 36 75.0
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 4.9e-07 58.9 35 77.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 77.1
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 77.1
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 77.1
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 74.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 74.3
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 74.3
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 74.3
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 74.3
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.1e-06 57.8 35 74.3
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.9e-06 57.0 36 69.4
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.9e-06 57.0 35 74.3
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.9e-06 57.0 35 71.4
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.9e-06 57.0 35 71.4
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.4e-06 56.6 36 72.2
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.4e-06 56.6 35 71.4
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 3.2e-06 56.2 36 72.2
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 3.2e-06 56.2 35 74.3
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 4.1e-06 55.8 35 74.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 4.1e-06 55.8 36 66.7
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.1e-06 55.8 36 69.4
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 5.4e-06 55.5 34 70.6
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 7.1e-06 55.1 35 74.3
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 7.1e-06 55.1 40 62.5
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 7.1e-06 55.1 35 71.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.2e-06 54.7 36 66.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.2e-06 54.7 36 66.7
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 9.2e-06 54.7 36 66.7
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 9.2e-06 54.7 36 66.7


User provided reference genes

Program Settings