Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.0e-117 425.2 226 100.0
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 5.4e-114 414.5 226 97.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.6e-113 412.9 226 96.5
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.3e-109 399.1 226 92.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.7e-105 385.6 227 90.7
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 7.8e-105 384.0 226 89.4
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.0e-104 383.6 226 89.4
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-104 382.5 227 89.0
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.3e-104 382.5 227 89.0
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 7.3e-103 377.5 227 87.2
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.2e-102 376.7 227 87.2
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.1e-102 375.9 226 89.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.1e-102 375.9 226 88.9
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.1e-101 373.6 226 88.9
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.1e-101 373.6 226 88.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.6e-100 369.0 228 86.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.9e-99 365.5 231 82.7
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 7.3e-95 350.9 228 80.7
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.6e-87 323.9 221 74.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.6e-87 323.9 221 73.8
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.2e-86 323.6 221 73.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.4e-85 320.1 224 71.9
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.6e-84 314.3 226 70.4
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 4.9e-83 311.6 223 70.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.1e-82 310.5 225 70.2
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.1e-82 310.5 223 69.5
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 4.2e-82 308.5 223 69.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.4e-82 308.1 223 68.6
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.4e-82 308.1 226 69.0
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.6e-81 306.6 232 67.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.6e-81 306.6 225 68.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.1e-81 306.2 230 69.1
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.1e-80 301.6 227 69.2
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.5e-79 300.1 219 70.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 2.5e-79 299.3 227 66.5
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.3e-79 298.9 227 65.6
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 7.3e-79 297.7 220 68.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 7.3e-79 297.7 220 67.7
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 9.6e-79 297.4 226 65.9
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 4.8e-78 295.0 228 65.4
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.2e-78 294.7 221 66.1
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 8.1e-78 294.3 223 65.5
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.4e-77 292.7 221 65.6
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.2e-76 290.4 219 65.3
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.2e-76 290.4 221 65.6
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.2e-76 290.4 220 67.3
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.6e-76 289.3 219 64.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.4e-76 288.9 224 63.8
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 3.4e-76 288.9 220 65.9
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 7.6e-76 287.7 228 64.0
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.9e-76 287.3 228 64.9
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 9.9e-76 287.3 218 64.7
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 3.8e-75 285.4 221 63.8
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.4e-74 282.7 228 62.7
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 3.2e-74 282.3 232 63.8
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.4e-74 281.6 220 64.1
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 9.3e-74 280.8 163 89.6
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.2e-73 280.4 225 60.9
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.6e-73 280.0 221 63.8
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.1e-73 279.6 225 64.4
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 2.7e-73 279.3 230 61.3
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.5e-73 278.9 248 59.3
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 3.5e-73 278.9 238 60.5
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.5e-73 278.9 232 60.8
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-72 276.9 224 62.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.3e-72 276.9 239 59.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.3e-72 276.2 224 62.1
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.0e-72 275.8 221 64.7
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.9e-71 273.1 229 63.3
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.9e-71 273.1 210 63.8
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.9e-71 273.1 238 58.8
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 3.3e-71 272.3 234 61.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.3e-70 270.4 222 59.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-70 270.0 220 62.7
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.6e-70 270.0 224 62.5
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.8e-70 269.2 231 60.6
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 6.2e-70 268.1 220 62.7
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 6.2e-70 268.1 236 58.9
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.4e-69 266.9 222 62.2
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.8e-69 266.5 222 59.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 5.3e-69 265.0 220 59.1
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 9.0e-69 264.2 224 61.2
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 9.0e-69 264.2 227 60.4
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 9.0e-69 264.2 220 58.6
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.2e-68 263.8 222 60.4
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-68 263.8 217 62.2
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.2e-68 263.8 221 60.6
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.0e-68 263.1 227 59.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 9.9e-68 260.8 219 63.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-67 260.0 220 61.4
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 2.9e-67 259.2 232 56.9
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.9e-67 258.5 222 61.3
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 4.9e-67 258.5 222 60.4
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 8.4e-67 257.7 219 58.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.1e-66 257.3 234 55.6
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.9e-66 256.5 222 60.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.9e-66 256.5 221 59.7
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.4e-66 256.1 224 59.4
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 4.2e-66 255.4 215 60.9
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.7e-65 252.7 231 54.1
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.7e-65 252.7 234 57.3
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.5e-65 252.3 219 60.7
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.0e-64 250.8 186 65.6
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.3e-64 250.4 276 51.8
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 8.7e-64 247.7 261 52.9
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 3.3e-63 245.7 219 57.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.6e-63 245.0 223 58.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.5e-60 236.9 214 57.0
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 4.5e-60 235.3 229 55.0
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.4e-58 230.3 216 53.7
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.2e-58 229.2 224 53.6
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.2e-57 227.3 163 69.9
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.1e-57 226.5 246 49.6
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.8e-56 223.4 218 54.6
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.1e-55 220.7 218 55.5
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 5.7e-55 218.4 241 49.0
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 3.1e-53 212.6 222 53.2
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.6e-52 209.5 161 67.7
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 3.4e-52 209.1 172 60.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-51 207.2 169 60.9
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.7e-51 206.8 176 60.8
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.5e-50 203.0 220 48.6
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 9.3e-50 201.1 162 66.7
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.3e-48 197.2 185 63.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 5.7e-47 191.8 145 67.6
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-46 190.7 220 51.8
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-46 190.7 141 70.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 2.2e-46 189.9 154 64.3
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.9e-42 176.8 221 45.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.1e-39 167.5 231 44.6
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 5.7e-39 165.2 203 47.8
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.3e-38 164.1 219 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.4e-37 159.8 187 48.1
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.2e-36 157.5 193 46.6
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 5.0e-35 152.1 225 47.1
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.1e-34 151.0 119 62.2
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 2.1e-33 146.7 116 66.4
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.1e-33 146.7 233 39.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.7e-33 145.6 115 64.3
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 7.9e-33 144.8 115 65.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 6.7e-32 141.7 218 36.7
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.3e-31 139.4 191 42.9
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 4.8e-30 135.6 126 57.1
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.1e-29 132.9 141 51.8
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-27 127.1 144 50.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-27 127.1 204 44.6
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.7e-27 127.1 204 44.6
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 1.1e-26 124.4 216 33.8
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.6e-23 113.2 90 63.3
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.3e-23 112.8 181 39.8
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 2.2e-22 110.2 190 43.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 2.4e-21 106.7 98 56.1
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.4e-21 106.7 116 54.3
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 5.9e-20 102.1 91 63.7
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.0e-19 101.3 53 94.3
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 5.0e-19 99.0 155 40.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.5e-19 98.6 52 92.3
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 8.5e-19 98.2 53 92.5
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 8.5e-19 98.2 53 92.5
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.5e-18 96.7 79 60.8
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.5e-18 96.7 79 60.8
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.2e-18 96.3 167 38.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 2.7e-17 93.2 86 55.8
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.0e-16 89.7 76 56.6
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 5.2e-16 89.0 156 35.3
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 6.8e-16 88.6 80 53.8
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.8e-16 88.6 101 45.5
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.0e-15 87.0 58 74.1
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.6e-15 86.7 70 58.6
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.8e-14 83.2 51 80.4
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 8.3e-14 81.6 75 57.3
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 8.3e-14 81.6 54 74.1
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.1e-13 81.3 76 52.6
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 7.0e-13 78.6 106 42.5
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.0e-12 77.0 147 35.4
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.2e-10 69.3 88 42.0
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.1e-09 67.0 79 48.1
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 4.0e-08 62.8 97 44.3
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.6e-07 60.1 53 54.7
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 2.2e-06 57.0 70 41.4


User provided reference genes

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