Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G33100 Arabidopsis lyrata HOM05D007534 ORTHO05D009540 3.4e-141 505.0 257 100.0
AT2G36885 Arabidopsis thaliana HOM05D007534 ORTHO05D009540 2.2e-132 475.7 257 94.6
CARHR131340 Cardamine hirsuta HOM05D007534 ORTHO05D009540 7.5e-120 434.1 254 86.2
Carub.0004s1873 Capsella rubella HOM05D007534 ORTHO05D009540 2.8e-119 432.2 257 86.4
BcaC02g11812 Brassica carinata HOM05D007534 ORTHO05D009540 2.3e-113 412.5 257 82.1
BcaB02g09324 Brassica carinata HOM05D007534 ORTHO05D009540 5.2e-113 411.4 258 83.3
C04p11090 Brassica napus HOM05D007534 ORTHO05D009540 3.8e-108 395.2 258 81.0
BraA05t19860Z Brassica rapa HOM05D007534 ORTHO05D009540 3.8e-108 395.2 258 81.0
BolC4t22757H Brassica oleracea HOM05D007534 ORTHO05D009540 4.2e-107 391.7 258 80.6
A05p08980 Brassica napus HOM05D007534 ORTHO05D009540 5.4e-102 374.8 258 77.9
Sp4g19170 Schrenkiella parvula HOM05D007534 ORTHO05D009540 1.5e-99 366.7 257 76.7
Thhalv10017130m.g Eutrema salsugineum HOM05D007534 ORTHO05D009540 5.6e-99 364.8 258 76.4
THA.LOC104807064 Tarenaya hassleriana HOM05D007534 ORTHO05D009540 5.2e-97 358.2 260 72.3
TAR369G0058 Trochodendron aralioides HOM05D007534 ORTHO05D009540 1.2e-88 330.5 257 68.5
Aa31LG5G22110 Aethionema arabicum HOM05D007534 ORTHO05D009540 8.3e-87 324.3 257 68.5
Atru.chr8.1788 Acer truncatum HOM05D007534 ORTHO05D009540 2.4e-86 322.8 275 66.2
Cpa.g.sc102.24 Carica papaya HOM05D007534 ORTHO05D009540 2.4e-86 322.8 271 65.7
Thecc.05G068400 Theobroma cacao HOM05D007534 ORTHO05D009540 4.1e-86 322.0 259 65.3
vmacro08785 Vaccinium macrocarpon HOM05D007534 ORTHO05D009540 4.1e-86 322.0 266 66.2
MSTRG.19184 Avicennia marina HOM05D007534 ORTHO05D009540 1.2e-85 320.5 224 72.3
Sed0017969 Sechium edule HOM05D007534 ORTHO05D009540 1.2e-85 320.5 263 65.0
Gohir.D01G204300 Gossypium hirsutum HOM05D007534 ORTHO05D009540 2.7e-85 319.3 261 65.5
Manes.09G065300 Manihot esculenta HOM05D007534 ORTHO05D009540 2.7e-85 319.3 265 65.3
ClCG04G009370 Citrullus lanatus HOM05D007534 ORTHO05D009540 2.3e-84 316.2 265 65.3
MELO3C024472.2 Cucumis melo HOM05D007534 ORTHO05D009540 3.9e-84 315.5 270 63.7
Prupe.7G128600 Prunus persica HOM05D007534 ORTHO05D009540 3.9e-84 315.5 265 64.9
CANSAT80G0853 Cannabis sativa HOM05D007534 ORTHO05D009540 5.0e-84 315.1 238 69.3
Gorai.002G246500 Gossypium raimondii HOM05D007534 ORTHO05D009540 5.0e-84 315.1 262 65.3
Gohir.A01G213100 Gossypium hirsutum HOM05D007534 ORTHO05D009540 8.6e-84 314.3 263 64.6
AUR62042063 Chenopodium quinoa HOM05D007534 ORTHO05D009540 3.3e-83 312.4 222 71.2
Duzib093G0985 Durio zibethinus HOM05D007534 ORTHO05D009540 5.6e-83 311.6 260 64.6
arahy.Tifrunner.gnm1.ann1.39JB5J Arachis hypogaea HOM05D007534 ORTHO05D009540 7.3e-83 311.2 203 77.8
arahy.Tifrunner.gnm1.ann1.C885SU Arachis hypogaea HOM05D007534 ORTHO05D009540 7.3e-83 311.2 203 77.8
CsaV3_6G039950 Cucumis sativus L. HOM05D007534 ORTHO05D009540 1.2e-82 310.5 246 65.9
Aqoxy1G01139 Aquilegia oxysepala HOM05D007534 ORTHO05D009540 2.1e-82 309.7 178 85.4
GSVIVG01033650001 Vitis vinifera HOM05D007534 ORTHO05D009540 2.1e-82 309.7 181 84.0
Lalb_Chr06g0171761 Lupinus albus HOM05D007534 ORTHO05D009540 2.8e-82 309.3 246 68.3
QL07p043071 Quercus lobata HOM05D007534 ORTHO05D009540 2.8e-82 309.3 256 62.1
COL.COLO4_26947 Corchorus olitorius HOM05D007534 ORTHO05D009540 3.6e-82 308.9 261 64.8
CAN.G900.25 Capsicum annuum HOM05D007534 ORTHO05D009540 6.2e-82 308.1 192 78.6
Migut.J00648 Erythranthe guttata HOM05D007534 ORTHO05D009540 6.2e-82 308.1 243 67.9
Eucgr.A01668 Eucalyptus grandis HOM05D007534 ORTHO05D009540 6.2e-82 308.1 252 66.7
Lj2A120T45 Lonicera japonica HOM05D007534 ORTHO05D009540 6.2e-82 308.1 269 65.1
TWI53G0173 Tripterygium wilfordii HOM05D007534 ORTHO05D009540 6.2e-82 308.1 261 64.8
Solyc09g008270.3 Solanum lycopersicum HOM05D007534 ORTHO05D009540 1.4e-81 307.0 242 66.9
Potri.016G098900 Populus trichocarpa HOM05D007534 ORTHO05D009540 3.1e-81 305.8 236 67.4
Sc20g0005570 Simmondsia chinensis HOM05D007534 ORTHO05D009540 5.2e-81 305.1 210 71.4
Oeu005026.1 Olea europaea HOM05D007534 ORTHO05D009540 6.8e-81 304.7 280 61.8
Sabra16G0099100 Salix brachista HOM05D007534 ORTHO05D009540 6.8e-81 304.7 253 64.0
Lsat_1_v5_gn_6_24941 Lactuca sativa HOM05D007534 ORTHO05D009540 2.0e-80 303.1 247 65.2
SGA_v2.0_scaffold75G24837 Striga asiatica HOM05D007534 ORTHO05D009540 2.0e-80 303.1 265 64.5
HanXRQChr13g0400981 Helianthus annuus HOM05D007534 ORTHO05D009540 2.6e-80 302.8 184 81.0
Nn2g13809 Nelumbo nucifera HOM05D007534 ORTHO05D009540 2.6e-80 302.8 251 65.7
PGSC0003DMG400003865 Solanum tuberosum HOM05D007534 ORTHO05D009540 3.4e-80 302.4 250 65.2
Glyma.13G141700 Glycine max HOM05D007534 ORTHO05D009540 4.4e-80 302.0 222 70.7
Sopen09g003090 Solanum pennellii HOM05D007534 ORTHO05D009540 4.4e-80 302.0 178 81.5
SalBow3G3627 Salvia bowleyana HOM05D007534 ORTHO05D009540 9.8e-80 300.8 244 63.1
Ca_28252_v3 Cicer arietinum L. HOM05D007534 ORTHO05D009540 1.3e-79 300.4 177 84.7
Lj5g0014413 Lotus japonicus HOM05D007534 ORTHO05D009540 8.3e-79 297.7 177 83.1
CiPaw.10G129000 Carya illinoinensis HOM05D007534 ORTHO05D009540 1.4e-78 297.0 181 79.6
Haze_20525 Corylus avellana HOM05D007534 ORTHO05D009540 7.1e-78 294.7 265 60.4
Dinv37321 Davidia involucrata HOM05D001037 ORTHO05D000888 7.1e-78 294.7 247 64.4
Medtr1g063070 Medicago truncatula HOM05D007534 ORTHO05D009540 7.1e-78 294.7 223 70.4
Psat6g074600 Pisum sativum HOM05D007534 ORTHO05D009540 7.1e-78 294.7 222 69.8
ECA233G2496 Erigeron canadensis HOM05D007534 ORTHO05D009540 3.5e-77 292.4 178 78.7
RcHm_v2.0_Chr3g0470401 Rosa chinensis HOM05D007534 ORTHO05D009540 3.5e-77 292.4 268 61.2
Phvul.007G147900 Phaseolus vulgaris HOM05D007534 ORTHO05D009540 6.0e-77 291.6 224 69.2
Zm00001eb003080 Zea mays HOM05D007534 ORTHO05D009540 1.3e-76 290.4 220 68.2
Os03g0137600 Oryza sativa ssp. japonica HOM05D007534 ORTHO05D009540 2.3e-76 289.7 177 79.7
Rhsim04G0144000 Rhododendron simsii HOM05D007534 ORTHO05D009540 3.0e-76 289.3 304 57.2
PSO266G0073 Papaver somniferum HOM05D007534 ORTHO05D009540 2.1e-74 283.1 198 71.7
MD12G1110000 Malus domestica HOM05D007534 ORTHO05D009540 4.7e-74 282.0 273 58.2
Hma1.2p1_0205F.1_g086900 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 6.2e-74 281.6 216 69.9
Cc06_g04320 Coffea canephora HOM05D007534 ORTHO05D009540 2.3e-73 279.6 246 64.2
Nitab4.5_0000578g0110 Nicotiana tabacum HOM05D007534 ORTHO05D009540 5.2e-73 278.5 267 58.1
Cfa017628 Carpinus fangiana HOM05D007534 ORTHO05D009540 1.5e-72 276.9 261 59.8
ATR0723G005 Amborella trichopoda HOM05D007534 ORTHO05D009540 2.2e-71 273.1 179 72.6
Ciclev10012507m.g Citrus clementina HOM05D007534 ORTHO05D009540 2.9e-71 272.7 179 75.4
CDE09G0108 Ceratophyllum demersum HOM05D007534 ORTHO05D009540 7.1e-70 268.1 179 72.6
Actinidia32489 Actinidia chinensis HOM05D007534 ORTHO05D009540 3.5e-69 265.8 153 82.4
Mapoly0049s0045 Marchantia polymorpha HOM05D007534 ORTHO05D009540 3.3e-67 259.2 185 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1862 Anthoceros agrestis HOM05D007534 ORTHO05D009540 1.8e-65 253.4 277 50.9
EL10Ac7g16645 Beta vulgaris HOM05D007534 ORTHO05D009540 5.8e-64 248.4 237 58.2
Nitab4.5_0008624g0030 Nicotiana tabacum HOM05D007534 ORTHO05D009540 1.3e-63 247.3 185 67.6
Peaxi162Scf00847g00032 Petunia axillaris HOM05D007534 ORTHO05D009540 1.3e-63 247.3 191 67.5
Ah.15g092560 Amaranthus hybridus HOM05D007534 ORTHO05D009540 2.2e-63 246.5 266 54.1
Pp3c2_17450 Physcomitrium patens HOM05D007534 ORTHO05D009540 1.1e-62 244.2 176 66.5
CSS0046236 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D009540 4.8e-58 228.8 215 58.6
TPR.G11259 Trifolium pratense HOM05D007534 ORTHO05D009540 1.8e-57 226.9 123 90.2
PGR004G0787 Punica granatum HOM05D007534 ORTHO05D009540 1.4e-54 217.2 207 59.9
Hma1.2p1_0828F.1_g225100 Hydrangea macrophylla HOM05D007534 ORTHO05D009540 2.4e-54 216.5 125 83.2
Cre02.g143450 Chlamydomonas reinhardtii HOM05D007534 ORTHO05D009540 3.4e-48 196.1 184 56.5
unitig_22.g5100 Utricularia gibba HOM05D007534 ORTHO05D009540 7.1e-46 188.3 133 68.4
AUR62026915 Chenopodium quinoa HOM05D007534 ORTHO05D009540 3.0e-44 183.0 168 59.5
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 1.6e-42 177.2 174 55.2
FAN15G1333 Fragaria x ananassa HOM05D007534 ORTHO05D009540 6.9e-41 171.8 94 86.2
MD04G1092000 Malus domestica HOM05D007534 ORTHO05D009540 2.8e-34 149.8 129 62.8
CSS0001990 Camellia sinensis var. sinensis HOM05D007534 ORTHO05D012079 4.6e-29 132.5 75 82.7
ATR0680G419 Amborella trichopoda HOM05D007534 ORTHO05D009540 4.8e-26 122.5 65 86.2
Rhsim04G0142700 Rhododendron simsii HOM05D007534 ORTHO05D009540 5.7e-19 99.0 56 87.5
MD04G1092200 Malus domestica HOM05D007534 ORTHO05D009540 1.4e-09 67.8 57 57.9


User provided reference genes

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