Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 8.4e-95 351.7 445 100.0
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 1.1e-78 298.1 449 92.2
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 5.3e-73 279.3 446 79.6
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.2e-66 257.3 457 83.8
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 2.8e-66 256.9 451 82.7
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 5.7e-59 232.6 426 73.0
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 2.6e-56 223.8 435 76.1
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 7.0e-49 199.1 461 77.7
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 3.5e-40 170.2 446 70.4
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 7.7e-40 169.1 446 70.4
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 1.0e-39 168.7 446 67.5
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 1.7e-39 167.9 446 70.4
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 1.5e-38 164.9 446 67.5
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 5.5e-38 162.9 446 70.0
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 1.4e-36 158.3 429 65.7
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 1.8e-36 157.9 429 65.7
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 5.7e-35 152.9 446 56.3
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 6.2e-29 132.9 445 68.1
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 4.0e-28 130.2 467 70.7
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 8.9e-28 129.0 467 71.1
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 2.6e-27 127.5 468 71.6
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.0e-24 117.9 479 63.7
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 1.3e-23 115.2 443 53.5
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 3.9e-23 113.6 394 61.9
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 9.5e-22 109.0 101 66.3
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.8e-21 107.5 111 57.7
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 3.6e-21 107.1 107 60.7
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 3.6e-21 107.1 107 60.7
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 1.8e-20 104.8 107 58.9
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 3.1e-20 104.0 101 62.4
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.5e-19 101.7 107 60.7
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.5e-16 90.5 86 57.0
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 1.7e-15 88.2 103 47.6
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 1.7e-15 88.2 86 55.8
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 5.1e-15 86.7 88 53.4
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.6e-15 85.9 79 57.0
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.6e-15 85.9 79 59.5
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.6e-15 85.9 79 57.0
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 1.9e-14 84.7 88 54.5
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 1.9e-14 84.7 93 49.5
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.5e-14 84.3 78 59.0
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 5.6e-14 83.2 95 49.5
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.5e-14 82.4 108 46.3
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 1.2e-13 82.0 108 46.3
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.2e-13 82.0 108 46.3
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 2.1e-13 81.3 95 50.5
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 6.2e-13 79.7 101 49.5
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 6.2e-13 79.7 89 50.6
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 6.2e-13 79.7 93 54.8
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 1.4e-12 78.6 109 45.0
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 1.4e-12 78.6 79 53.2
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 2.3e-12 77.8 92 52.2
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.2e-11 75.5 96 47.9
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 1.2e-11 75.5 99 46.5
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 2.0e-11 74.7 81 50.6
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 2.6e-11 74.3 94 43.6
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 2.6e-11 74.3 89 44.9
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 5.8e-11 73.2 98 44.9
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 7.6e-11 72.8 101 43.6
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 9.9e-11 72.4 90 45.6
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.9e-10 70.9 90 45.6
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 2.9e-10 70.9 90 44.4
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.7e-10 70.5 124 39.5
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 3.7e-10 70.5 83 47.0
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 4.9e-10 70.1 94 43.6
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 6.4e-10 69.7 83 42.2
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 6.4e-10 69.7 124 39.5
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 8.4e-10 69.3 95 46.3
Lsat_1_v5_gn_6_29041 Lactuca sativa HOM05D006485 ORTHO05D006108 8.4e-10 69.3 93 45.2
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 8.4e-10 69.3 99 47.5
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 8.4e-10 69.3 95 41.1
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 1.1e-09 68.9 77 48.1
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 1.1e-09 68.9 124 40.3
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 1.4e-09 68.6 101 44.6
ECA238G0083 Erigeron canadensis HOM05D006485 ORTHO05D006108 1.9e-09 68.2 100 44.0
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 3.2e-09 67.4 94 42.6
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 4.1e-09 67.0 92 45.7
Lsat_1_v5_gn_2_23681 Lactuca sativa HOM05D006485 ORTHO05D006108 4.1e-09 67.0 72 48.6
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 5.4e-09 66.6 77 54.5
Nn6g35112 Nelumbo nucifera HOM05D006485 ORTHO05D006108 7.1e-09 66.2 108 38.9
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 7.1e-09 66.2 92 41.3
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 9.2e-09 65.9 84 46.4
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 1.2e-08 65.5 86 47.7
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 1.2e-08 65.5 80 46.2
Ah.08g211120 Amaranthus hybridus HOM05D006485 ORTHO05D006108 1.6e-08 65.1 100 36.0
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 1.6e-08 65.1 90 42.2
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 2.1e-08 64.7 96 42.7
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 2.7e-08 64.3 96 42.7
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 2.7e-08 64.3 100 38.0
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 3.5e-08 63.9 83 47.0
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.5e-08 63.9 61 50.8
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.5e-08 63.9 61 50.8
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 4.6e-08 63.5 110 37.3
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.6e-08 63.5 61 50.8
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 4.6e-08 63.5 61 50.8
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 6.0e-08 63.2 107 38.3
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 6.0e-08 63.2 61 50.8
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 7.8e-08 62.8 90 41.1
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.8e-08 62.8 61 49.2
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.8e-08 62.8 61 50.8
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.3e-07 62.0 90 43.3
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 3.9e-07 60.5 41 68.3
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.9e-07 60.5 61 49.2
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 3.9e-07 60.5 96 41.7
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 5.1e-07 60.1 128 31.2
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 8.6e-07 59.3 82 41.5
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 1.1e-06 58.9 88 44.3
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 1.5e-06 58.5 96 40.6
Actinidia32467 Actinidia chinensis HOM05D011389 ORTHO05D006108 1.9e-06 58.2 99 37.4
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.5e-06 57.8 52 59.6
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 4.3e-06 57.0 115 33.9
Solyc09g008770.3 Solanum lycopersicum HOM05D006485 ORTHO05D006108 4.3e-06 57.0 78 44.9


User provided reference genes

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