Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 4.6e-172 607.8 312 100.0
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 6.2e-161 570.9 312 94.2
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 3.4e-151 538.5 311 86.5
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 5.8e-151 537.7 313 88.5
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.5e-146 523.1 312 83.7
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 3.8e-142 508.4 314 82.8
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 4.9e-142 508.1 314 82.8
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 1.1e-141 506.9 314 82.5
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 1.1e-141 506.9 314 82.5
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 9.3e-141 503.8 314 81.8
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.5e-140 501.9 312 82.1
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 2.4e-136 489.2 314 79.6
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.3e-118 430.3 303 70.3
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 6.1e-108 394.8 308 63.6
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 6.7e-107 391.3 306 65.0
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 2.0e-106 389.8 305 65.6
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.0e-106 389.8 306 64.7
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.1e-104 384.0 306 64.1
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 1.4e-104 383.6 308 62.7
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 1.2e-103 380.6 308 62.7
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 3.5e-103 379.0 307 63.8
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 7.7e-103 377.9 309 60.8
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 1.7e-102 376.7 312 60.9
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 1.7e-102 376.7 312 60.6
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 2.2e-102 376.3 308 61.7
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 2.9e-102 375.9 309 62.8
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 6.5e-102 374.8 312 62.5
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 2.5e-101 372.9 312 60.6
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 2.1e-100 369.8 309 59.2
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 6.1e-100 368.2 314 58.6
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 1.4e-99 367.1 302 62.3
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 4.0e-99 365.5 307 60.3
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 4.0e-99 365.5 308 60.4
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 1.2e-98 364.0 306 62.1
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.7e-98 361.7 308 61.0
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 9.7e-98 360.9 333 56.2
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 1.3e-97 360.5 307 61.2
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 3.7e-97 359.0 312 57.1
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 4.8e-97 358.6 314 58.3
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 2.4e-96 356.3 307 58.0
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 7.0e-96 354.8 307 58.0
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 7.0e-96 354.8 311 59.5
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.7e-95 352.8 306 60.1
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 2.7e-95 352.8 312 55.8
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 5.9e-95 351.7 310 58.4
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 7.7e-95 351.3 305 58.4
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 7.7e-95 351.3 306 59.8
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 7.7e-95 351.3 310 57.7
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 2.2e-94 349.7 315 58.4
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 5.0e-94 348.6 305 58.4
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 5.0e-94 348.6 307 58.3
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 5.0e-94 348.6 308 58.1
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 5.0e-94 348.6 313 55.0
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 6.5e-94 348.2 304 56.9
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 6.5e-94 348.2 311 55.6
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 1.5e-93 347.1 307 58.0
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 2.5e-93 346.3 299 60.9
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 4.2e-93 345.5 305 56.4
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 9.4e-93 344.4 310 56.8
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 3.6e-92 342.4 303 57.8
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.0e-91 340.9 310 57.7
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 1.0e-91 340.9 314 56.4
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.8e-91 340.1 305 58.0
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.2e-91 338.6 317 56.8
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 1.2e-90 337.4 308 55.5
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.5e-90 337.0 294 56.8
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.6e-90 336.3 303 57.1
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 9.8e-90 334.3 295 58.0
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 9.1e-88 327.8 329 54.4
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.6e-87 327.0 308 54.5
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 2.7e-87 326.2 305 56.7
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 5.9e-87 325.1 307 53.7
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.0e-86 324.3 295 56.6
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.2e-86 323.2 280 61.1
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 5.2e-83 312.0 268 61.6
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.2e-82 310.8 269 62.1
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.7e-82 308.5 265 61.9
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 2.4e-80 303.1 306 50.7
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 3.1e-80 302.8 300 54.7
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 2.0e-79 300.1 196 83.2
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 4.5e-79 298.9 267 59.9
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 6.6e-78 295.0 311 52.4
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 1.0e-75 287.7 231 61.9
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 3.0e-75 286.2 308 51.9
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 8.9e-75 284.6 308 51.0
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.5e-74 283.9 309 50.5
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 2.0e-74 283.5 265 61.9
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 6.4e-73 278.5 325 49.5
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 2.4e-72 276.6 257 56.8
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.0e-70 271.2 224 59.4
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 5.6e-69 265.4 259 52.5
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 3.1e-67 259.6 244 54.9
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 6.8e-67 258.5 269 52.0
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 1.5e-66 257.3 224 56.7
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 2.0e-66 256.9 244 58.6
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 3.9e-62 242.7 317 43.8
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 8.6e-62 241.5 282 50.0
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-60 237.3 211 55.9
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 1.7e-57 227.3 222 55.0
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.9e-53 213.8 154 64.3
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 5.6e-53 212.2 304 41.8
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 1.2e-52 211.1 307 44.0
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 6.8e-51 205.3 308 41.2
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 9.9e-50 201.4 320 38.1
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-48 197.6 185 55.7
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 5.1e-46 189.1 298 37.9
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.6e-42 175.3 155 56.1
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.3e-41 174.5 225 44.0
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 2.5e-37 160.2 162 48.8
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 3.3e-37 159.8 212 43.4
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 8.1e-36 155.2 107 69.2
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.1e-35 154.8 169 49.7
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-32 144.8 159 52.8
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 7.1e-32 142.1 160 49.4
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 1.8e-30 137.5 325 31.1
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.8e-28 130.2 165 45.5
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 7.6e-26 122.1 254 37.4
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 6.4e-25 119.0 91 58.2
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.9e-24 117.5 178 42.7
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 9.3e-24 115.2 149 45.0
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 6.7e-22 109.0 75 60.0
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 3.3e-21 106.7 145 40.0
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 8.2e-20 102.1 80 61.2
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 2.4e-19 100.5 80 60.0
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 8.4e-17 92.0 118 42.4
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 9.7e-13 78.6 197 34.0
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 2.8e-12 77.0 70 47.1
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 5.3e-11 72.8 106 39.6
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 7.6e-10 68.9 106 42.5
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 6.1e-07 59.3 41 65.9


User provided reference genes

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