Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G31820 Arabidopsis lyrata HOM05D008102 ORTHO05D010266 2.4e-60 235.3 120 100.0
AT2G35730 Arabidopsis thaliana HOM05D008102 ORTHO05D010266 5.0e-50 201.1 120 90.0
Thhalv10017440m.g Eutrema salsugineum HOM05D008102 ORTHO05D010266 4.5e-43 177.9 120 80.8
CARHR129970 Cardamine hirsuta HOM05D008102 ORTHO05D010266 1.3e-42 176.4 120 80.8
Carub.0004s1746 Capsella rubella HOM05D008102 ORTHO05D010266 4.2e-41 171.4 122 77.0
BcaC02g07675 Brassica carinata HOM05D008102 ORTHO05D010266 1.3e-37 159.8 123 74.0
A04p27180 Brassica napus HOM05D008102 ORTHO05D010266 1.7e-37 159.5 115 76.5
C04p64690 Brassica napus HOM05D008102 ORTHO05D010266 1.7e-37 159.5 115 76.5
BraA04t18216Z Brassica rapa HOM05D008102 ORTHO05D010266 1.7e-37 159.5 115 76.5
Sp4g18000 Schrenkiella parvula HOM05D008102 ORTHO05D010266 1.8e-36 156.0 120 75.0
BolC4t27946H Brassica oleracea HOM05D008102 ORTHO05D010266 7.4e-30 134.0 99 75.8
C04p12250 Brassica napus HOM05D008102 ORTHO05D010266 8.8e-23 110.5 93 66.7
BolC4t22872H Brassica oleracea HOM05D008102 ORTHO05D010266 8.8e-23 110.5 93 66.7
BcaB06g28866 Brassica carinata HOM05D008102 ORTHO05D010266 4.2e-17 91.7 72 69.4
THA.LOC109116598 Tarenaya hassleriana HOM05D008102 ORTHO05D010266 1.4e-15 86.7 110 50.0
Psat4g071720 Pisum sativum HOM05D008102 ORTHO05D010266 2.3e-10 69.3 77 41.6
Glyma.17G141000 Glycine max HOM05D008102 ORTHO05D010266 2.9e-10 68.9 71 50.7
Manes.02G038800 Manihot esculenta HOM05D008102 ORTHO05D010266 3.8e-10 68.6 85 42.4
Rhsim07G0108100 Rhododendron simsii HOM05D008102 ORTHO05D010266 3.8e-10 68.6 63 52.4
PGSC0003DMG400004757 Solanum tuberosum HOM05D008102 ORTHO05D010266 6.6e-10 67.8 87 40.2
Sopen08g027200 Solanum pennellii HOM05D008102 ORTHO05D010266 8.6e-10 67.4 75 42.7
Gohir.A12G217600 Gossypium hirsutum HOM05D008102 ORTHO05D010266 1.5e-09 66.6 103 36.9
Ah.12g056760 Amaranthus hybridus HOM05D008102 ORTHO05D010266 3.3e-09 65.5 64 50.0
EL10Ac5g13056 Beta vulgaris HOM05D008102 ORTHO05D010266 5.5e-09 64.7 64 46.9
Gohir.D12G220100 Gossypium hirsutum HOM05D008102 ORTHO05D010266 7.2e-09 64.3 105 35.2
Hund14530 Selenicereus undatus HOM05D008102 ORTHO05D010266 7.2e-09 64.3 66 47.0
AUR62039959 Chenopodium quinoa HOM05D008102 ORTHO05D010266 9.5e-09 63.9 62 50.0
Glyma.05G058600 Glycine max HOM05D008102 ORTHO05D010266 1.2e-08 63.5 97 41.2
CiPaw.11G153400 Carya illinoinensis HOM05D008102 ORTHO05D010266 1.6e-08 63.2 68 45.6
VMungo0251G3084 Vigna mungo HOM05D008102 ORTHO05D010266 2.1e-08 62.8 71 47.9
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.8e-08 62.4 65 49.2
Gorai.008G235800 Gossypium raimondii HOM05D008102 ORTHO05D010266 3.6e-08 62.0 105 34.3
Lj4g0008790 Lotus japonicus HOM05D008102 ORTHO05D010266 8.0e-08 60.8 71 46.5
Nn1g01035 Nelumbo nucifera HOM05D008102 ORTHO05D010266 8.0e-08 60.8 89 36.0
Nitab4.5_0008481g0050 Nicotiana tabacum HOM05D008102 ORTHO05D010266 8.0e-08 60.8 92 35.9
Phvul.003G219900 Phaseolus vulgaris HOM05D008102 ORTHO05D010266 1.0e-07 60.5 71 46.5
HanXRQChr03g0088621 Helianthus annuus HOM05D008102 ORTHO05D010266 1.8e-07 59.7 64 43.8
Peaxi162Scf00002g01718 Petunia axillaris HOM05D008102 ORTHO05D010266 1.8e-07 59.7 88 37.5
Sed0012982 Sechium edule HOM05D008102 ORTHO05D010266 1.8e-07 59.7 65 44.6
GSVIVG01001314001 Vitis vinifera HOM05D008102 ORTHO05D010266 1.8e-07 59.7 95 33.7
CsaV3_3G002790 Cucumis sativus L. HOM05D008102 ORTHO05D010266 4.0e-07 58.5 67 44.8
PSO782G4576 Papaver somniferum HOM05D008102 ORTHO05D010266 4.0e-07 58.5 67 46.3
Potri.003G110500 Populus trichocarpa HOM05D008102 ORTHO05D010266 5.2e-07 58.2 108 35.2
TPR.G37625 Trifolium pratense HOM05D008102 ORTHO05D010266 6.8e-07 57.8 84 44.0
QL12p012528 Quercus lobata HOM05D008102 ORTHO05D010266 8.9e-07 57.4 110 30.9
Solyc08g078730.3 Solanum lycopersicum HOM05D008102 ORTHO05D010266 8.9e-07 57.4 87 37.9
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.2e-06 57.0 55 50.9
CDE12G0094 Ceratophyllum demersum HOM05D008102 ORTHO05D010266 1.5e-06 56.6 62 45.2
Sabra03G0076600 Salix brachista HOM05D008102 ORTHO05D010266 1.5e-06 56.6 108 34.3
HPP92_007043 Vanilla planifolia HOM05D008102 ORTHO05D010266 1.5e-06 56.6 64 51.6
Lalb_Chr05g0225771 Lupinus albus HOM05D002420 ORTHO05D002422 2.0e-06 56.2 72 43.1
Os01g0927300 Oryza sativa ssp. japonica HOM05D008102 ORTHO05D010266 4.4e-06 55.1 61 45.9
TWI81G0747 Tripterygium wilfordii HOM05D008102 ORTHO05D010266 5.7e-06 54.7 67 43.3
GSVIVG01006641001 Vitis vinifera HOM05D008102 ORTHO05D010266 5.7e-06 54.7 53 45.3
Lsat_1_v5_gn_6_91441 Lactuca sativa HOM05D008102 ORTHO05D010266 9.8e-06 53.9 68 36.8
Medtr4g101025 Medicago truncatula HOM05D008102 ORTHO05D010266 9.8e-06 53.9 44 59.1
Zm00001eb363820 Zea mays HOM05D008102 ORTHO05D010266 9.8e-06 53.9 61 45.9


User provided reference genes

Program Settings