Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.4e-57 226.1 117 100.0
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.5e-54 214.2 113 96.5
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 7.2e-54 213.8 117 95.7
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.7e-53 211.8 113 96.5
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.0e-52 208.0 117 94.0
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 5.2e-52 207.6 113 92.0
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 5.2e-52 207.6 117 94.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 95.6
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 95.6
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 95.6
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 2.6e-51 205.3 113 93.8
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 94.7
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 4.4e-51 204.5 113 94.7
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 4.4e-51 204.5 113 94.7
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 5.7e-51 204.1 113 93.8
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 5.7e-51 204.1 113 93.8
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 88.9
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 88.9
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 7.5e-51 203.8 117 88.9
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 94.7
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 9.7e-51 203.4 113 92.9
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 9.7e-51 203.4 113 93.8
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 9.7e-51 203.4 113 92.9
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 9.7e-51 203.4 113 93.8
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.3e-50 203.0 116 87.9
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.2e-50 202.2 116 88.8
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 88.0
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 88.0
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 88.9
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 114 88.6
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 114 88.6
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 88.0
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 88.9
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 87.2
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 87.2
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 87.2
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 6.3e-50 200.7 117 88.0
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 91.5
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 88.0
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 88.0
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 88.0
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 88.0
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 87.2
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 91.2
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 87.2
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 87.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 90.6
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 88.9
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.4e-49 198.7 117 89.7
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 2.4e-49 198.7 114 87.7
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.1e-49 198.4 119 87.4
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.1e-49 198.4 117 88.0
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 90.3
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 4.1e-49 198.0 112 90.2
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 88.5
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 5.3e-49 197.6 114 87.7
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 5.3e-49 197.6 117 85.5
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 5.3e-49 197.6 117 88.0
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 90.6
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 7.0e-49 197.2 114 89.5
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 88.9
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 84.6
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 7.0e-49 197.2 114 86.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 9.1e-49 196.8 117 84.6
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 9.1e-49 196.8 118 87.3
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 9.1e-49 196.8 117 88.0
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.2e-48 196.4 117 89.7
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 117 83.8
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 117 83.8
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.2e-48 196.4 117 88.9
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.6e-48 196.1 117 88.0
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.7e-48 195.3 117 87.2
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.7e-48 195.3 117 87.2
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 118 86.4
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.5e-48 194.5 118 87.3
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.5e-48 194.5 118 87.3
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.5e-48 194.5 118 87.3
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 117 85.5
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.5e-48 194.5 117 86.3
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 88.9
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 7.7e-48 193.7 114 86.8
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 7.7e-48 193.7 117 85.5
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 87.6
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.7e-48 193.7 117 86.3
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.7e-48 193.7 117 87.2
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.0e-47 193.4 114 86.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 88.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 87.2
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.0e-47 193.4 117 83.8
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.3e-47 193.0 118 85.6
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.3e-47 193.0 117 85.5
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.3e-47 193.0 114 86.8
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.7e-47 192.6 113 87.6
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 3.8e-47 191.4 118 85.6
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.8e-47 191.4 110 88.2
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 82.9
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 5.0e-47 191.0 114 87.7
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 6.5e-47 190.7 114 86.0
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 8.5e-47 190.3 114 88.6
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 8.5e-47 190.3 118 83.9
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.1e-46 189.9 114 85.1
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.1e-46 189.9 114 86.8
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.1e-46 189.9 114 86.8
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 1.1e-46 189.9 113 85.8
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 86.7
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.9e-46 189.1 114 87.7
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.2e-46 188.3 116 84.5
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 4.2e-46 188.0 114 86.0
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.5e-46 187.6 118 83.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 85.8
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.2e-45 186.4 110 85.5
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.1e-45 185.7 111 86.5
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 2.1e-45 185.7 114 86.0
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.7e-45 184.5 118 81.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 8.0e-45 183.7 113 83.2
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 8.0e-45 183.7 113 83.2
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.4e-44 183.0 109 87.2
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.3e-44 182.2 110 86.4
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 8.8e-44 180.3 123 78.9
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 8.8e-44 180.3 111 85.6
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 1.2e-43 179.9 113 81.4
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.0e-43 179.1 114 78.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 2.6e-43 178.7 111 83.8
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 4.4e-43 177.9 113 80.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.3e-42 176.4 113 79.6
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.8e-42 175.3 117 75.2
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 4.8e-42 174.5 149 66.4
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 7.0e-41 170.6 109 78.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.2e-40 169.9 114 71.1
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.0e-39 166.8 197 53.3
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.9e-38 162.5 174 56.9
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.2e-36 154.5 118 73.7
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 6.8e-36 154.1 89 85.4
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.5e-35 152.9 107 71.0
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 3.4e-35 151.8 85 91.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 7.5e-35 150.6 88 86.4
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.7e-34 149.4 89 88.8
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 4.9e-34 147.9 90 86.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 4.9e-34 147.9 92 83.7
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.2e-32 143.3 103 75.7
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 4.5e-32 141.4 89 85.4
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.7e-31 139.4 105 71.4
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.7e-31 139.4 105 71.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.9e-30 136.0 86 82.6
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 7.3e-30 134.0 81 82.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.6e-29 132.9 73 91.8
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.6e-29 132.9 72 88.9
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 3.0e-28 128.6 80 85.0
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 3.0e-28 128.6 67 92.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.4e-25 119.0 74 87.8
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 4.1e-25 118.2 106 51.9
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 7.0e-25 117.5 74 86.5
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 4.6e-24 114.8 87 72.4
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 7.8e-24 114.0 76 72.4
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.3e-22 108.2 71 81.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-21 106.7 107 62.6
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 8.0e-21 104.0 74 70.3
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.9e-15 85.1 54 77.8
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 6.8e-12 74.3 48 81.2
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 5.8e-11 71.2 47 83.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.2e-10 69.3 42 85.7
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.2e-10 69.3 42 85.7
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 6.0e-08 61.2 42 76.2
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.3e-07 60.1 59 64.4
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 5.1e-07 58.2 42 78.6


User provided reference genes

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