Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.5e-107 392.9 196 100.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.3e-95 350.5 196 88.8
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 8.3e-95 350.5 196 88.3
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.5e-83 312.4 195 81.5
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.1e-82 309.3 196 80.1
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.8e-82 308.9 196 78.1
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-78 296.2 198 77.3
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.9e-78 296.2 198 77.3
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.9e-78 296.2 198 77.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.7e-76 289.7 198 77.3
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.7e-76 289.7 198 77.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 4.3e-75 285.0 197 74.6
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.2e-71 272.7 196 73.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.2e-66 254.6 203 65.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.5e-64 250.0 201 67.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.5e-64 250.0 203 66.5
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.4e-64 248.8 202 65.8
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 7.5e-64 247.7 200 67.5
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.9e-63 245.7 201 63.7
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 6.4e-63 244.6 196 66.3
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 6.4e-63 244.6 196 66.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.2e-62 242.3 202 66.3
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 4.1e-62 241.9 196 65.8
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.2e-61 240.4 197 64.5
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.2e-61 240.4 197 64.5
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-61 239.6 197 64.5
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 8.9e-57 224.2 202 59.4
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 4.9e-55 218.4 202 57.4
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.2e-54 215.3 199 56.3
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 7.1e-54 214.5 202 56.4
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 4.6e-53 211.8 198 55.1
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 2.5e-51 206.1 200 53.5
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.5e-51 206.1 199 54.3
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.5e-51 206.1 199 54.3
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.6e-51 204.1 198 53.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.6e-50 203.4 199 52.3
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.1e-50 203.0 199 53.8
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.1e-50 203.0 198 54.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.8e-50 202.6 198 54.5
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 4.7e-50 201.8 194 53.1
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 4.7e-50 201.8 202 55.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.2e-50 201.4 198 54.0
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 6.2e-50 201.4 200 53.5
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.1e-50 201.1 199 52.8
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.1e-49 200.7 196 50.5
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.4e-49 199.5 203 51.2
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 3.1e-49 199.1 206 52.4
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.0e-49 198.7 199 52.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 3.4e-48 195.7 197 51.8
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.6e-48 194.5 203 53.7
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 7.6e-48 194.5 198 50.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.3e-47 193.7 197 52.3
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-46 190.7 204 51.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 3.2e-46 189.1 204 49.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.2e-46 188.7 205 52.2
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.2e-45 187.2 215 49.3
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.6e-45 186.8 197 48.7
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 3.5e-45 185.7 203 54.2
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 3.9e-44 182.2 201 47.3
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.9e-44 182.2 204 49.5
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.1e-44 181.8 199 51.3
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.9e-43 179.9 193 48.7
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.5e-43 179.5 196 51.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.3e-43 179.1 204 49.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 4.3e-43 178.7 200 48.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.6e-43 178.3 204 49.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.3e-42 177.2 203 48.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.6e-42 176.8 185 49.2
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 2.1e-42 176.4 195 47.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.1e-42 176.4 193 50.3
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.8e-42 176.0 202 50.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 3.6e-42 175.6 199 49.7
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.6e-42 175.6 201 48.3
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.8e-42 175.3 203 47.8
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 4.8e-42 175.3 206 47.1
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.8e-42 175.3 197 48.2
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-41 174.1 200 49.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-41 174.1 200 49.0
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.1e-41 174.1 200 50.0
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.1e-41 174.1 200 50.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 4.0e-41 172.2 195 51.8
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.0e-41 172.2 202 49.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 4.0e-41 172.2 197 49.7
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 4.0e-41 172.2 197 49.7
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 6.9e-41 171.4 196 48.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.0e-41 171.0 196 49.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 9.0e-41 171.0 202 47.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 9.0e-41 171.0 200 46.5
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.2e-40 170.6 202 46.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.2e-40 170.6 195 47.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.5e-40 170.2 197 48.2
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.0e-40 169.9 195 51.3
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.6e-40 169.5 200 46.5
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.6e-40 169.5 206 48.1
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.5e-40 168.7 195 47.7
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 4.5e-40 168.7 207 46.9
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 9.9e-40 167.5 196 47.4
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-39 166.8 197 46.7
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-39 166.8 197 46.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.7e-39 166.8 196 48.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.2e-39 166.4 195 45.6
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.9e-39 166.0 197 45.2
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.9e-39 165.2 198 47.5
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 6.4e-39 164.9 193 47.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 8.4e-39 164.5 197 46.2
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 8.4e-39 164.5 198 46.0
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.4e-38 163.7 200 47.5
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.9e-38 163.3 217 46.1
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 4.2e-38 162.2 198 47.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 7.1e-38 161.4 198 46.5
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.1e-38 161.4 196 49.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 9.3e-38 161.0 195 45.6
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.2e-37 160.6 206 48.1
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.6e-37 160.2 203 44.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.1e-37 159.8 202 47.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.5e-37 159.1 202 46.5
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 7.9e-37 157.9 217 45.6
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.0e-36 157.5 202 45.5
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.3e-36 156.4 153 54.9
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.0e-36 156.0 271 37.3
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.9e-36 155.6 199 45.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.5e-35 153.7 222 41.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 2.5e-35 152.9 198 43.9
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 4.3e-35 152.1 195 43.6
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 4.3e-35 152.1 208 42.3
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 9.6e-35 151.0 262 38.2
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 6.2e-34 148.3 196 42.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 8.1e-34 147.9 212 40.6
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.1e-33 147.5 187 44.4
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 3.1e-33 146.0 150 52.7
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.2e-32 144.1 199 41.7
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 2.6e-32 142.9 88 76.1
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.6e-32 141.4 88 72.7
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.2e-31 139.8 198 41.4
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.2e-31 139.8 200 42.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 2.9e-31 139.4 327 32.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 3.8e-31 139.0 199 40.2
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.2e-29 134.0 199 42.7
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.7e-29 132.9 88 71.6
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-28 130.2 97 71.1
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-28 130.2 97 71.1
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 2.5e-27 126.3 97 70.1
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 2.5e-27 126.3 97 70.1
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 3.3e-27 125.9 197 37.1
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.1e-26 123.2 88 64.8
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 4.8e-26 122.1 121 58.7
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.1e-25 120.9 181 43.1
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.8e-25 120.2 180 40.0
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.4e-25 119.8 197 37.1
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.1e-25 119.4 122 48.4
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 9.0e-25 117.9 151 45.7
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.5e-24 117.1 88 60.2
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.6e-24 116.3 154 43.5
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 7.6e-24 114.8 88 60.2
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.0e-23 114.4 88 59.1
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.3e-23 114.0 109 54.1
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 6.5e-23 111.7 158 41.8
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-22 110.9 79 72.2
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 5.1e-20 102.1 166 39.2
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 7.4e-19 98.2 150 39.3
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.3e-17 92.0 159 41.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 7.7e-16 88.2 138 42.8
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.9e-14 83.6 155 41.9
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.9e-13 78.2 73 56.2
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.3e-12 76.6 54 70.4
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 5.7e-11 72.0 95 43.2
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 2.2e-10 70.1 197 32.5
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 3.1e-09 66.2 39 76.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 9.1e-09 64.7 44 63.6
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 9.1e-09 64.7 44 63.6
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.2e-08 64.3 84 44.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.2e-08 64.3 73 47.9
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 3.4e-08 62.8 84 42.9
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 4.5e-08 62.4 49 53.1


User provided reference genes

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