Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2717.6 1398 100.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2649.0 1402 96.7
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2610.9 1402 95.1
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2603.9 1402 95.1
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2600.1 1402 94.9
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2596.6 1402 94.9
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2595.8 1402 95.0
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2593.5 1364 97.9
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2592.8 1402 94.7
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2582.7 1411 94.5
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2502.6 1431 91.2
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2347.0 1407 85.4
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2261.1 1402 82.2
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2256.9 1403 81.5
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2249.9 1403 81.9
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2244.5 1417 80.6
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2244.2 1404 80.9
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2239.2 1405 80.9
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2238.8 1404 80.9
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2234.9 1406 80.8
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2233.4 1400 80.9
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2230.7 1402 80.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2223.0 1403 80.5
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1403 80.3
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2220.3 1406 80.7
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2212.6 1406 80.4
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2211.0 1403 80.3
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2210.3 1404 80.0
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2210.3 1406 80.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2205.3 1402 79.8
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2204.5 1403 79.8
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2200.6 1403 79.8
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2200.2 1405 78.9
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2194.5 1408 79.1
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2193.7 1403 79.5
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2190.6 1405 78.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2189.8 1347 82.0
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2183.7 1403 79.5
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2179.4 1403 79.6
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2179.1 1405 78.2
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2169.8 1410 77.7
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2165.2 1405 77.6
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2163.7 1409 77.1
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2161.7 1402 77.5
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2159.8 1409 77.1
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2157.5 1405 77.7
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2157.5 1404 78.2
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2145.9 1407 76.8
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2144.4 1407 77.0
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2143.6 1411 76.9
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2142.9 1405 77.1
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2138.2 1401 76.9
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2137.1 1498 73.5
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2136.7 1405 76.8
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2135.5 1401 77.0
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2135.5 1422 77.9
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2130.5 1447 76.1
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2130.1 1403 77.1
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2125.9 1403 77.4
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2123.6 1401 77.1
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2112.4 1404 76.5
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2110.9 1415 76.1
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2108.6 1391 77.5
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2108.2 1425 75.4
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2103.9 1416 75.1
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2101.2 1406 76.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2099.3 1433 74.9
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2093.2 1405 76.0
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2092.8 1402 75.5
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2077.8 1405 74.7
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2072.4 1501 71.6
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2068.1 1411 75.3
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2025.8 1268 81.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2025.8 1402 73.5
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2015.4 1227 81.6
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1984.1 1430 72.1
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1938.7 1714 62.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1935.2 1350 72.8
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1931.8 1306 75.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1925.2 1365 72.5
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1921.7 1369 71.7
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1884.4 1465 68.3
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1880.9 1193 78.4
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1854.7 1342 70.6
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1837.8 1390 67.2
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1834.7 1389 69.7
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1786.9 1404 65.5
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1785.4 1397 65.6
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1700.6 1546 60.2
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1579.3 821 97.6
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1523.5 815 95.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1442.6 1157 62.2
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1382.9 945 73.9
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1372.8 1395 51.3
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1341.3 1231 54.3
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1325.8 1359 50.2
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1324.7 1376 49.5
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1307.0 993 69.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1223.0 715 85.9
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1114.4 896 62.6
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1086.2 775 72.0
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 4.1e-305 1052.0 809 69.0
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 3.2e-289 999.2 588 84.2
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.5e-283 980.3 812 58.6
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.5e-233 812.4 615 69.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.6e-208 731.1 482 77.0
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 7.0e-204 715.7 534 74.5
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.9e-193 681.0 517 66.9
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 3.6e-192 676.8 529 67.5
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.3e-186 658.3 1483 30.1
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.4e-148 530.0 365 72.3
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.1e-128 464.9 541 48.6
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 4.7e-107 394.0 552 47.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 8.5e-101 373.2 299 70.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.8e-98 365.5 275 67.6
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.1e-87 329.7 217 74.2
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.7e-85 322.4 222 72.1
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.3e-72 279.6 430 42.6
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 8.6e-61 240.4 145 79.3
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 7.3e-52 210.7 133 75.2
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.8e-42 179.5 128 63.3
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 4.9e-40 171.4 89 92.1
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 8.1e-35 154.1 116 69.8
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 6.9e-34 151.0 94 80.9
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.9e-32 145.6 150 47.3
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 6.4e-32 144.4 83 86.7
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.4e-31 142.5 112 62.5
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.8e-27 129.0 83 69.9
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 3.6e-27 128.6 136 52.2
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 6.2e-27 127.9 101 63.4
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.8e-26 126.3 151 53.0
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 9.3e-23 114.0 239 35.6
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 1.6e-22 113.2 88 63.6
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 3.5e-22 112.1 165 41.2
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.0e-21 109.0 68 82.4
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.8e-19 102.4 100 52.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.4e-17 95.5 124 46.8
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 5.8e-17 94.7 51 90.2
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 7.6e-17 94.4 144 48.6
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.2e-15 89.0 50 90.0
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 9.3e-15 87.4 89 47.2
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 2.3e-13 82.8 105 53.3
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.3e-11 77.0 45 82.2
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.4e-10 73.6 42 85.7
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.4e-10 73.6 100 42.0
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.3e-08 67.0 50 62.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.3e-08 67.0 50 62.0
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.1e-07 63.9 49 71.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 49 71.4
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.2e-07 62.4 44 79.5
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 5.5e-07 61.6 54 55.6
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.2e-06 60.5 48 68.8


User provided reference genes

Program Settings