Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G30870 Arabidopsis lyrata HOM05D006595 ORTHO05D008238 8.2e-92 340.5 189 100.0
AT2G34860 Arabidopsis thaliana HOM05D006595 ORTHO05D008238 1.4e-67 260.0 205 71.7
Sp4g17140 Schrenkiella parvula HOM05D006595 ORTHO05D008238 1.2e-58 230.3 205 63.4
Carub.0004s1654 Capsella rubella HOM05D006595 ORTHO05D008238 1.7e-57 226.5 207 63.3
A04p26620 Brassica napus HOM05D006595 ORTHO05D008238 8.6e-57 224.2 206 61.2
C04p64040 Brassica napus HOM05D006595 ORTHO05D008238 8.6e-57 224.2 206 61.2
BraA04t18167Z Brassica rapa HOM05D006595 ORTHO05D008238 8.6e-57 224.2 206 60.7
Thhalv10017283m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 1.9e-56 223.0 205 62.4
BcaC02g07751 Brassica carinata HOM05D006595 ORTHO05D008238 3.3e-56 222.2 206 60.2
BolC4t27880H Brassica oleracea HOM05D006595 ORTHO05D008238 9.5e-56 220.7 206 59.7
BcaB06g28828 Brassica carinata HOM05D006595 ORTHO05D008238 4.7e-55 218.4 206 59.7
C04p13910 Brassica napus HOM05D006595 ORTHO05D008238 1.1e-54 217.2 209 59.8
BolC4t22980H Brassica oleracea HOM05D006595 ORTHO05D008238 1.1e-54 217.2 209 59.8
BraA05t20025Z Brassica rapa HOM05D006595 ORTHO05D008238 4.0e-54 215.3 205 60.0
BcaC02g11570 Brassica carinata HOM05D006595 ORTHO05D008238 2.6e-53 212.6 210 59.5
A05p10810 Brassica napus HOM05D006595 ORTHO05D008238 9.9e-53 210.7 206 59.7
CARHR129020 Cardamine hirsuta HOM05D006595 ORTHO05D008238 1.7e-52 209.9 204 61.8
BcaC07g42181 Brassica carinata HOM05D006595 ORTHO05D008238 1.2e-47 193.7 158 65.2
Aa31sc409G10 Aethionema arabicum HOM05D006595 ORTHO05D008238 3.6e-47 192.2 195 57.9
BcaB01g02723 Brassica carinata HOM05D006595 ORTHO05D008238 6.0e-42 174.9 158 62.0
Nitab4.5_0005477g0080 Nicotiana tabacum HOM05D006595 ORTHO05D008238 6.6e-41 171.4 174 56.3
Nitab4.5_0001620g0030 Nicotiana tabacum HOM05D006595 ORTHO05D008238 1.1e-40 170.6 169 56.2
FAN11G2269 Fragaria x ananassa HOM05D000750 ORTHO05D000714 7.6e-37 157.9 75 92.0
MD11G1014500 Malus domestica HOM05D006595 ORTHO05D008238 1.3e-36 157.1 74 93.2
BcaB06g29011 Brassica carinata HOM05D006595 ORTHO05D008238 6.4e-36 154.8 159 56.6
FAN16G0514 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-35 154.1 75 89.3
Lj2A705G49 Lonicera japonica HOM05D006595 ORTHO05D008238 1.1e-35 154.1 138 60.1
FvH4_3g44571 Fragaria vesca HOM05D006595 ORTHO05D008238 7.1e-35 151.4 75 88.0
THA.LOC104815114 Tarenaya hassleriana HOM05D006595 ORTHO05D008238 2.1e-34 149.8 213 48.4
Lsat_1_v5_gn_1_68280 Lactuca sativa HOM05D006595 ORTHO05D008238 1.1e-32 144.1 164 53.7
Thhalv10012349m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 4.5e-29 132.1 61 96.7
QL01p010272 Quercus lobata HOM05D006595 ORTHO05D008238 5.8e-29 131.7 190 44.7
vmacro04249 Vaccinium macrocarpon HOM05D006595 ORTHO05D008238 2.2e-28 129.8 295 36.6
Prupe.6G012000 Prunus persica HOM05D006595 ORTHO05D008238 4.2e-27 125.6 206 42.7
MD03G1011600 Malus domestica HOM05D006595 ORTHO05D008238 2.7e-26 122.9 193 42.5
RcHm_v2.0_Chr5g0081351 Rosa chinensis HOM05D006595 ORTHO05D008238 3.5e-26 122.5 200 40.5
Atru.chr3.2190 Acer truncatum HOM05D006595 ORTHO05D008238 4.6e-26 122.1 166 47.0
Aqoxy2G00094 Aquilegia oxysepala HOM05D006595 ORTHO05D008238 6.0e-26 121.7 152 50.7
Cfa009626 Carpinus fangiana HOM05D006595 ORTHO05D008238 7.9e-26 121.3 191 44.0
Ciclev10016858m.g Citrus clementina HOM05D006595 ORTHO05D008238 7.9e-26 121.3 193 44.6
CsaV3_4G023550 Cucumis sativus L. HOM05D006595 ORTHO05D008238 7.9e-26 121.3 206 42.7
Sed0019652 Sechium edule HOM05D006595 ORTHO05D008238 1.0e-25 120.9 200 44.0
PGR102G3301 Punica granatum HOM05D006595 ORTHO05D008238 1.3e-25 120.6 196 43.4
CiPaw.13G171400 Carya illinoinensis HOM05D006595 ORTHO05D008238 1.8e-25 120.2 191 42.9
COL.COLO4_10447 Corchorus olitorius HOM05D006595 ORTHO05D008238 1.8e-25 120.2 205 42.4
Haze_22995 Corylus avellana HOM05D006595 ORTHO05D008238 1.8e-25 120.2 191 43.5
MELO3C014661.2 Cucumis melo HOM05D006595 ORTHO05D008238 2.3e-25 119.8 206 41.3
Manes.03G089200 Manihot esculenta HOM05D006595 ORTHO05D008238 2.3e-25 119.8 195 40.5
FAN17G0104 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-25 119.4 192 42.2
Peaxi162Scf00441g00213 Petunia axillaris HOM05D006595 ORTHO05D008238 3.9e-25 119.0 188 42.6
FAN25G3451 Fragaria x ananassa HOM05D000750 ORTHO05D000714 6.7e-25 118.2 203 41.9
ClCG02G023820 Citrullus lanatus HOM05D006595 ORTHO05D008238 1.5e-24 117.1 204 40.7
Dinv13419 Davidia involucrata HOM05D006595 ORTHO05D008238 1.9e-24 116.7 184 44.0
FvH4_3g44681 Fragaria vesca HOM05D006595 ORTHO05D008238 1.9e-24 116.7 203 41.4
BcaB01g03109 Brassica carinata HOM05D006595 ORTHO05D008238 9.6e-24 114.4 122 53.3
Glyma.20G243800 Glycine max HOM05D006595 ORTHO05D008238 9.6e-24 114.4 74 73.0
Potri.001G009800 Populus trichocarpa HOM05D006595 ORTHO05D008238 2.8e-23 112.8 196 40.8
FAN21G3045 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.7e-23 112.5 181 42.0
PGSC0003DMG401032143 Solanum tuberosum HOM05D006595 ORTHO05D008238 3.7e-23 112.5 157 45.2
Duzib168G0997 Durio zibethinus HOM05D006595 ORTHO05D008238 6.2e-23 111.7 196 42.9
Nn7g35969 Nelumbo nucifera HOM05D006595 ORTHO05D008238 6.2e-23 111.7 131 51.1
CANSAT11G0726 Cannabis sativa HOM05D006595 ORTHO05D008238 1.1e-22 110.9 199 39.2
AUR62019207 Chenopodium quinoa HOM05D006595 ORTHO05D008238 1.8e-22 110.2 169 43.8
CSS0011176 Camellia sinensis var. sinensis HOM05D006595 ORTHO05D008238 2.4e-22 109.8 146 47.9
FAN16G1668 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.4e-22 109.8 181 41.4
Dinv34743 Davidia involucrata HOM05D006595 ORTHO05D008238 3.1e-22 109.4 138 47.1
Sopen01g002130 Solanum pennellii HOM05D006595 ORTHO05D008238 3.1e-22 109.4 157 45.2
Phvul.007G006200 Phaseolus vulgaris HOM05D006595 ORTHO05D008238 5.3e-22 108.6 150 44.7
Migut.F01376 Erythranthe guttata HOM05D006595 ORTHO05D008238 6.9e-22 108.2 181 38.1
EL10Ac4g10339 Beta vulgaris HOM05D006595 ORTHO05D008238 9.0e-22 107.8 170 42.4
TWI34G0416 Tripterygium wilfordii HOM05D006595 ORTHO05D008238 9.0e-22 107.8 197 40.1
Gohir.A11G206900 Gossypium hirsutum HOM05D006595 ORTHO05D008238 1.5e-21 107.1 196 41.8
CAN.G140.24 Capsicum annuum HOM05D006595 ORTHO05D008238 2.0e-21 106.7 169 42.0
ECA248G3199 Erigeron canadensis HOM05D006595 ORTHO05D008238 2.0e-21 106.7 167 42.5
Gohir.A08G079300 Gossypium hirsutum HOM05D006595 ORTHO05D008238 2.0e-21 106.7 196 41.8
Lj5g0010961 Lotus japonicus HOM05D006595 ORTHO05D008238 2.0e-21 106.7 170 43.5
SGA_v2.0_scaffold78G25462 Striga asiatica HOM05D006595 ORTHO05D008238 2.0e-21 106.7 167 44.3
TPR.G10430 Trifolium pratense HOM05D006595 ORTHO05D008238 2.0e-21 106.7 143 43.4
CDE04G0274 Ceratophyllum demersum HOM05D006595 ORTHO05D008238 2.6e-21 106.3 161 45.3
Lj2A706G26 Lonicera japonica HOM05D006595 ORTHO05D008238 2.6e-21 106.3 149 44.3
SalBow6G7140 Salvia bowleyana HOM05D006595 ORTHO05D008238 3.4e-21 105.9 170 41.8
Psat6g238960 Pisum sativum HOM05D006595 ORTHO05D008238 5.8e-21 105.1 190 39.5
Rhsim13G0228400 Rhododendron simsii HOM05D000750 ORTHO05D000714 5.8e-21 105.1 169 42.6
Sabra01G0007800 Salix brachista HOM05D006595 ORTHO05D008238 5.8e-21 105.1 215 36.3
ATR1149G131 Amborella trichopoda HOM05D006595 ORTHO05D008238 7.6e-21 104.8 74 68.9
Gohir.D11G216800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 7.6e-21 104.8 196 41.3
Medtr1g116170 Medicago truncatula HOM05D006595 ORTHO05D008238 7.6e-21 104.8 190 38.9
TAR636G1600 Trochodendron aralioides HOM05D006595 ORTHO05D008238 7.6e-21 104.8 189 38.6
PSO384G3168 Papaver somniferum HOM05D006595 ORTHO05D008238 1.3e-20 104.0 186 39.2
Cre11.g475850 Chlamydomonas reinhardtii HOM05D006595 ORTHO05D008238 1.7e-20 103.6 71 64.8
PSO339G5391 Papaver somniferum HOM05D006595 ORTHO05D008238 1.7e-20 103.6 186 38.7
Gohir.D08G088800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 4.9e-20 102.1 196 40.8
Gorai.004G093500 Gossypium raimondii HOM05D006595 ORTHO05D008238 4.9e-20 102.1 196 40.8
Gorai.007G232900 Gossypium raimondii HOM05D006595 ORTHO05D008238 4.9e-20 102.1 161 42.9
Ca_11377_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 6.4e-20 101.7 152 42.8
Os08g0463900 Oryza sativa ssp. japonica HOM05D006595 ORTHO05D008238 8.4e-20 101.3 152 39.5
Cc01_g00990 Coffea canephora HOM05D006595 ORTHO05D008238 1.1e-19 100.9 142 45.8
Solyc01g006130.4 Solanum lycopersicum HOM05D006595 ORTHO05D008238 1.1e-19 100.9 153 43.8
AUR62000037 Chenopodium quinoa HOM05D006595 ORTHO05D008238 1.9e-19 100.1 176 39.8
HPP92_016182 Vanilla planifolia HOM05D006595 ORTHO05D008238 2.5e-19 99.8 71 67.6
Cpa.g.sc119.91 Carica papaya HOM05D006595 ORTHO05D008238 4.2e-19 99.0 196 37.8
GSVIVG01025384001 Vitis vinifera HOM05D006595 ORTHO05D008238 4.2e-19 99.0 157 40.8
Thecc.09G215500 Theobroma cacao HOM05D006595 ORTHO05D008238 5.5e-19 98.6 154 46.1
Oeu038858.2 Olea europaea HOM05D006595 ORTHO05D008238 9.3e-19 97.8 203 40.4
HPP92_026734 Vanilla planifolia HOM05D006595 ORTHO05D008238 9.3e-19 97.8 71 66.2
MSTRG.208 Avicennia marina HOM05D006595 ORTHO05D008238 1.2e-18 97.4 152 45.4
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.6e-18 97.1 74 63.5
Eucgr.B03632 Eucalyptus grandis HOM05D006595 ORTHO05D008238 1.6e-18 97.1 201 37.8
arahy.Tifrunner.gnm1.ann1.ZL64GD Arachis hypogaea HOM05D006595 ORTHO05D008238 1.3e-17 94.0 177 40.7
Pp3c3_12490 Physcomitrium patens HOM05D006595 ORTHO05D008238 1.3e-17 94.0 177 36.2
Glyma.10G293900 Glycine max HOM05D006595 ORTHO05D008238 1.8e-17 93.6 181 39.8
SEGI_11759 Sequoiadendron giganteum HOM05D006595 ORTHO05D008238 1.8e-17 93.6 74 62.2
MSTRG.8324 Avicennia marina HOM05D006595 ORTHO05D008238 2.3e-17 93.2 169 42.0
Sc16g0012000 Simmondsia chinensis HOM05D006595 ORTHO05D008238 3.9e-17 92.4 199 37.2
Lalb_Chr02g0143771 Lupinus albus HOM05D006595 ORTHO05D008238 1.1e-16 90.9 74 60.8
SMO331G0037 Selaginella moellendorffii HOM05D006595 ORTHO05D008238 2.5e-16 89.7 72 59.7
Ah.04g161600 Amaranthus hybridus HOM05D000750 ORTHO05D000714 3.3e-16 89.4 174 39.1
Hund06674 Selenicereus undatus HOM05D006595 ORTHO05D008238 4.3e-16 89.0 67 62.7
Mapoly0120s0023 Marchantia polymorpha HOM05D006595 ORTHO05D008238 4.8e-15 85.5 150 38.0
HanXRQChr11g0344931 Helianthus annuus HOM05D006595 ORTHO05D008238 2.0e-13 80.1 148 39.9
unitig_747.g21415 Utricularia gibba HOM05D006595 ORTHO05D008238 4.5e-13 79.0 212 32.5
arahy.Tifrunner.gnm1.ann1.SSSL8J Arachis hypogaea HOM05D006595 ORTHO05D008238 1.0e-12 77.8 187 36.4
CBR_g22940 Chara braunii HOM05D006595 ORTHO05D008238 1.3e-12 77.4 174 31.6
VMungo0720G3035 Vigna mungo HOM05D006595 ORTHO05D008238 1.7e-12 77.0 152 37.5
PRCOL_00006415 Prasinoderma coloniale HOM05D006595 ORTHO05D008238 2.2e-12 76.6 71 50.7
C08p10520 Brassica napus HOM05D015077 ORTHO05D020174 1.6e-10 70.5 139 38.1
QL01p010258 Quercus lobata HOM05D006595 ORTHO05D008238 3.5e-10 69.3 148 36.5
QL08p062509 Quercus lobata HOM05D006595 ORTHO05D008238 3.5e-10 69.3 148 36.5
MCO03G122 Micromonas commoda HOM05D006595 ORTHO05D008238 6.1e-10 68.6 71 47.9
BolC9t55789H Brassica oleracea HOM05D015077 ORTHO05D020174 2.3e-09 66.6 55 63.6
FAN21G2764 Fragaria x ananassa HOM05D006595 ORTHO05D008238 3.0e-09 66.2 37 78.4
C03p12060 Brassica napus HOM05D015077 ORTHO05D020174 6.7e-09 65.1 55 61.8
BolC7t46182H Brassica oleracea HOM05D015077 ORTHO05D020174 1.5e-08 63.9 55 61.8
Pp3c4_29200 Physcomitrium patens HOM05D006595 ORTHO05D008238 1.9e-08 63.5 133 34.6
BolC3t13676H Brassica oleracea HOM05D015077 ORTHO05D020174 7.4e-08 61.6 61 57.4
C07p57110 Brassica napus HOM05D015077 ORTHO05D020174 2.8e-07 59.7 53 60.4
Thhalv10011829m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 6.9e-06 55.1 108 38.0


User provided reference genes

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