Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G30590 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.3e-133 479.2 290 100.0
AL270U10020 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.5e-132 476.5 290 99.3
AT2G34610 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 1.0e-101 374.0 292 79.8
Carub.0004s1629 Capsella rubella HOM05D007074 ORTHO05D008542 2.2e-80 303.1 298 63.8
Thhalv10017803m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 1.8e-77 293.5 287 59.9
CARHR128710 Cardamine hirsuta HOM05D007074 ORTHO05D008542 7.5e-76 288.1 291 71.8
BolC4t27860H Brassica oleracea HOM05D007074 ORTHO05D008542 1.8e-74 283.5 289 59.2
A04p26510 Brassica napus HOM05D007074 ORTHO05D008542 3.8e-72 275.8 289 60.6
C04p63930 Brassica napus HOM05D007074 ORTHO05D008542 3.8e-72 275.8 289 60.6
BraA04t18155Z Brassica rapa HOM05D007074 ORTHO05D008542 4.2e-71 272.3 289 60.6
Sp4g16880 Schrenkiella parvula HOM05D007074 ORTHO05D008542 4.4e-68 262.3 300 55.3
BraA05t20049Z Brassica rapa HOM05D007074 ORTHO05D008542 4.8e-67 258.8 289 56.7
A05p11040 Brassica napus HOM05D007074 ORTHO05D008542 2.4e-66 256.5 289 56.1
BcaB06g28786 Brassica carinata HOM05D007074 ORTHO05D008542 3.8e-64 249.2 289 55.7
BcaC02g11538 Brassica carinata HOM05D007074 ORTHO05D008542 1.6e-62 243.8 300 53.7
C04p14170 Brassica napus HOM05D007074 ORTHO05D008542 4.7e-62 242.3 300 53.3
BolC4t23006H Brassica oleracea HOM05D007074 ORTHO05D008542 4.7e-62 242.3 300 53.3
BcaB02g09522 Brassica carinata HOM05D007074 ORTHO05D008542 1.2e-60 237.7 289 53.6
Aa31LG10G6790 Aethionema arabicum HOM05D007074 ORTHO05D008542 2.9e-51 206.5 285 48.1
THA.LOC104814307 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 1.0e-48 198.0 295 46.4
BcaB07g32617 Brassica carinata HOM05D007074 ORTHO05D008542 5.0e-48 195.7 306 44.4
Sp1g26010 Schrenkiella parvula HOM05D007074 ORTHO05D008542 1.1e-47 194.5 300 48.3
AL1G44090 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 3.3e-47 193.0 296 51.4
AL700U10010 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 3.3e-47 193.0 296 51.4
Carub.0001s2842 Capsella rubella HOM05D007074 ORTHO05D008542 5.6e-47 192.2 304 45.1
CARHR029240 Cardamine hirsuta HOM05D007074 ORTHO05D008542 7.3e-47 191.8 304 46.1
Thhalv10008361m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 1.2e-46 191.0 313 42.2
A09p36350 Brassica napus HOM05D007074 ORTHO05D008542 2.2e-43 180.3 301 45.2
BraA09t39159Z Brassica rapa HOM05D007074 ORTHO05D008542 2.2e-43 180.3 301 45.2
BcaC05g27044 Brassica carinata HOM05D007074 ORTHO05D008542 6.4e-43 178.7 301 42.5
C05p29030 Brassica napus HOM05D007074 ORTHO05D008542 6.4e-43 178.7 301 42.5
BolC5t31631H Brassica oleracea HOM05D007074 ORTHO05D008542 6.4e-43 178.7 301 42.5
A07p10060 Brassica napus HOM05D007074 ORTHO05D008542 1.9e-42 177.2 300 41.7
BraA07t28799Z Brassica rapa HOM05D007074 ORTHO05D008542 1.9e-42 177.2 300 41.7
BcaB03g13841 Brassica carinata HOM05D007074 ORTHO05D008542 4.1e-42 176.0 293 43.0
AT1G30190 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 5.4e-42 175.6 295 44.7
THA.LOC104820655 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 1.4e-37 161.0 297 40.1
Aa31LG6G5540 Aethionema arabicum HOM05D007074 ORTHO05D008542 2.7e-33 146.7 377 34.2
Thecc.06G148300 Theobroma cacao HOM05D007074 ORTHO05D008542 1.9e-18 97.4 293 31.4
Gohir.A05G147500 Gossypium hirsutum HOM05D007074 ORTHO05D008542 6.0e-17 92.4 310 29.7
BolC7t42036H Brassica oleracea HOM05D007074 ORTHO05D008542 1.0e-16 91.7 228 40.4
Gorai.009G154100 Gossypium raimondii HOM05D007074 ORTHO05D008542 1.3e-16 91.3 267 32.6
Gohir.D05G150000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 3.0e-16 90.1 269 32.3
BcaC06g35492 Brassica carinata HOM05D007074 ORTHO05D008542 3.9e-16 89.7 228 39.9
Duzib235G1065 Durio zibethinus HOM05D007074 ORTHO05D008542 7.3e-15 85.5 298 29.5
COL.COLO4_31042 Corchorus olitorius HOM05D007074 ORTHO05D008542 2.1e-14 84.0 270 32.6
Hma1.2p1_0020F.1_g014170 Hydrangea macrophylla HOM05D007074 ORTHO05D008542 8.1e-14 82.0 273 30.0
Glyma.13G219300 Glycine max HOM05D007074 ORTHO05D008542 1.8e-13 80.9 288 29.5
MD10G1260500 Malus domestica HOM05D007074 ORTHO05D008542 4.0e-13 79.7 271 30.6
Prupe.4G082900 Prunus persica HOM05D007074 ORTHO05D008542 4.0e-13 79.7 298 30.5
TWI53G1156 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 4.0e-13 79.7 279 29.7
Phvul.006G166000 Phaseolus vulgaris HOM05D007074 ORTHO05D008542 6.9e-13 79.0 272 30.1
QL05p057294 Quercus lobata HOM05D007074 ORTHO05D008542 9.0e-13 78.6 277 28.2
Manes.15G123200 Manihot esculenta HOM05D007074 ORTHO05D008542 1.5e-12 77.8 293 29.7
Ciclev10017572m.g Citrus clementina HOM05D007074 ORTHO05D008542 2.0e-12 77.4 294 29.9
Glyma.15G092900 Glycine max HOM05D007074 ORTHO05D008542 2.0e-12 77.4 282 29.4
CiPaw.09G122000 Carya illinoinensis HOM05D007074 ORTHO05D008542 5.8e-12 75.9 295 29.2
MD05G1281700 Malus domestica HOM05D007074 ORTHO05D008542 9.9e-12 75.1 267 31.1
CiPaw.10G090600 Carya illinoinensis HOM05D007074 ORTHO05D008542 4.9e-11 72.8 272 28.3
Cfa000927 Carpinus fangiana HOM05D007074 ORTHO05D008542 8.4e-11 72.0 295 31.9
TPR.G26250 Trifolium pratense HOM05D007074 ORTHO05D008542 8.4e-11 72.0 295 27.5
FAN25G3808 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.1e-10 71.6 296 27.7
FAN16G0984 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.9e-10 70.9 288 26.4
Lalb_Chr20g0117821 Lupinus albus HOM05D007074 ORTHO05D008542 1.9e-10 70.9 287 27.5
Manes.17G071900 Manihot esculenta HOM05D007074 ORTHO05D008542 1.9e-10 70.9 294 29.6
Medtr2g019160 Medicago truncatula HOM05D007074 ORTHO05D008542 5.4e-10 69.3 280 26.8
Psat1g191080 Pisum sativum HOM05D007074 ORTHO05D008542 9.3e-10 68.6 271 27.7
Psat1g191160 Pisum sativum HOM05D007074 ORTHO05D008542 9.3e-10 68.6 263 27.4
Nn3g20397 Nelumbo nucifera HOM05D007074 ORTHO05D008542 1.3e-08 64.7 275 26.9
FAN21G0051 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.8e-08 64.3 292 24.7
Oeu034132.1 Olea europaea HOM05D007074 ORTHO05D008542 1.8e-08 64.3 277 27.4
Atru.chr10.1177 Acer truncatum HOM05D007074 ORTHO05D008542 2.3e-08 63.9 273 37.0
TWI73G0984 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 5.1e-08 62.8 283 29.0
Lj6g0018330 Lotus japonicus HOM05D007074 ORTHO05D008542 6.7e-08 62.4 292 26.4
MELO3C002739.2 Cucumis melo HOM05D007074 ORTHO05D008542 3.3e-07 60.1 294 26.9
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 9.6e-07 58.5 280 26.1
CsaV3_1G032390 Cucumis sativus L. HOM05D007074 ORTHO05D008542 1.3e-06 58.2 294 28.2
Dinv05217 Davidia involucrata HOM05D007074 ORTHO05D008542 3.7e-06 56.6 141 30.5
PGR031G2887 Punica granatum HOM05D007074 ORTHO05D008542 3.7e-06 56.6 265 29.4
arahy.Tifrunner.gnm1.ann1.0G1Q0G Arachis hypogaea HOM05D007074 ORTHO05D008542 4.8e-06 56.2 295 25.4
VMungo0540G2047 Vigna mungo HOM05D007074 ORTHO05D008542 4.8e-06 56.2 228 28.9
Gohir.A06G138601 Gossypium hirsutum HOM05D007074 ORTHO05D008542 6.2e-06 55.8 257 26.1


User provided reference genes

Program Settings