Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 4.4e-137 491.5 286 100.0
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 1.8e-122 443.0 286 90.9
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 4.0e-122 441.8 286 78.3
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 1.2e-121 440.3 286 87.1
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 2.8e-115 419.1 286 83.6
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 1.5e-113 413.3 244 82.8
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 2.6e-113 412.5 286 74.1
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 4.9e-112 408.3 244 82.0
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 4.9e-112 408.3 244 82.0
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 3.2e-111 405.6 244 81.6
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 3.2e-111 405.6 244 81.6
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 2.7e-110 402.5 284 72.2
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 2.8e-99 365.9 275 69.5
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 1.5e-92 343.6 244 71.3
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 1.6e-78 297.0 244 64.3
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 9.6e-76 287.7 244 62.7
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 4.0e-74 282.3 240 60.4
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.5e-73 280.4 250 56.8
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 1.0e-69 267.7 235 57.0
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 1.3e-69 267.3 241 57.7
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 8.7e-69 264.6 256 50.8
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 1.1e-68 264.2 251 51.4
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 1.1e-68 264.2 240 54.2
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 4.3e-68 262.3 248 54.0
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 5.6e-68 261.9 238 55.0
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 7.4e-68 261.5 244 54.1
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 2.1e-67 260.0 247 52.6
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 2.8e-67 259.6 251 50.2
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 8.1e-67 258.1 252 51.2
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 8.1e-67 258.1 252 50.8
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 8.1e-67 258.1 247 55.5
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 8.1e-67 258.1 247 55.5
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 8.1e-67 258.1 245 53.1
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.4e-66 257.3 246 53.7
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 1.4e-66 257.3 245 54.3
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 1.8e-66 256.9 247 55.1
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 2.4e-66 256.5 244 53.7
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 5.3e-66 255.4 238 54.6
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 5.3e-66 255.4 249 49.4
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 5.3e-66 255.4 249 51.8
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 6.9e-66 255.0 246 51.6
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 9.0e-66 254.6 244 54.5
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 9.0e-66 254.6 258 53.1
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 9.0e-66 254.6 243 50.6
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 1.2e-65 254.2 252 52.4
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 2.0e-65 253.4 258 53.5
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 2.0e-65 253.4 243 52.7
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 2.6e-65 253.1 251 49.0
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 3.4e-65 252.7 258 52.7
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 3.4e-65 252.7 254 51.6
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 5.8e-65 251.9 244 52.9
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 5.8e-65 251.9 258 51.9
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 1.0e-64 251.1 244 52.9
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 1.3e-64 250.8 246 52.0
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 1.3e-64 250.8 239 52.3
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 2.2e-64 250.0 241 52.3
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 2.9e-64 249.6 239 50.6
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 2.9e-64 249.6 230 54.8
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 4.9e-64 248.8 254 51.6
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 4.9e-64 248.8 251 49.0
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 1.4e-63 247.3 250 49.2
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.4e-63 247.3 243 55.1
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 4.2e-63 245.7 245 51.4
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 9.3e-63 244.6 131 89.3
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.2e-62 244.2 232 54.3
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 2.7e-62 243.0 247 48.2
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 3.5e-62 242.7 249 49.0
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 3.5e-62 242.7 236 53.8
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 3.5e-62 242.7 238 54.2
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 6.0e-62 241.9 243 48.1
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 6.0e-62 241.9 237 54.4
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 7.9e-62 241.5 236 52.5
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 7.9e-62 241.5 230 53.5
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 1.0e-61 241.1 244 49.6
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 3.0e-61 239.6 238 52.1
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 3.0e-61 239.6 238 52.1
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 3.9e-61 239.2 231 54.1
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 8.7e-61 238.0 240 50.0
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 4.3e-60 235.7 228 54.8
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 4.3e-60 235.7 240 50.8
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 1.3e-59 234.2 238 50.4
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 2.8e-59 233.0 253 47.4
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.1e-58 231.1 249 50.6
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.4e-58 230.7 249 49.8
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.4e-58 230.7 231 51.1
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 1.4e-58 230.7 244 48.4
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 4.1e-58 229.2 232 51.3
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 9.0e-58 228.0 234 48.7
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 5.9e-57 225.3 226 49.1
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 1.3e-56 224.2 228 48.7
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.2e-56 223.4 233 51.1
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 1.1e-55 221.1 249 47.4
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 2.1e-54 216.9 248 46.0
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 1.0e-53 214.5 231 48.5
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 3.9e-53 212.6 229 45.9
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 5.1e-53 212.2 231 48.5
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 2.5e-52 209.9 235 46.0
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 4.3e-52 209.1 236 49.2
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 1.3e-51 207.6 236 47.9
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 3.1e-50 203.0 162 57.4
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 3.1e-50 203.0 279 41.6
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 4.1e-50 202.6 230 47.8
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 1.2e-49 201.1 228 46.9
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 2.0e-49 200.3 241 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 5.9e-49 198.7 245 41.2
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 1.3e-48 197.6 183 54.6
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 1.7e-48 197.2 226 46.5
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.9e-47 193.7 210 47.6
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 1.9e-47 193.7 210 47.6
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 7.2e-47 191.8 250 41.6
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 7.9e-46 188.3 239 43.9
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 3.0e-45 186.4 217 47.5
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 2.8e-43 179.9 244 42.2
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 5.3e-42 175.6 232 42.7
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 9.1e-42 174.9 233 44.2
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.1e-39 167.9 131 56.5
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 4.2e-39 166.0 158 50.6
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 2.7e-38 163.3 235 40.0
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.5e-36 157.5 133 54.1
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 2.6e-36 156.8 278 36.0
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 5.7e-36 155.6 268 36.6
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 5.0e-32 142.5 185 40.0
BraA05t20057Z Brassica rapa HOM05D005274 ORTHO05D006485 4.7e-30 136.0 88 75.0
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 3.0e-29 133.3 109 56.9
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 8.2e-27 125.2 88 63.6
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 4.5e-25 119.4 236 34.7
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 3.2e-23 113.2 220 33.6
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 1.6e-22 110.9 297 27.9
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 1.8e-18 97.4 106 44.3
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 1.2e-17 94.7 106 43.4
Nn8g41301 Nelumbo nucifera HOM05D005274 ORTHO05D006485 2.6e-12 77.0 110 40.9
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 8.3e-11 72.0 64 48.4
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 1.6e-09 67.8 62 46.8
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 4.5e-09 66.2 238 26.5
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 2.9e-08 63.5 126 32.5
CSS0005176 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 9.5e-07 58.5 97 38.1
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 1.6e-06 57.8 78 41.0
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 8.0e-06 55.5 140 27.1


User provided reference genes

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