Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 8.3e-160 567.0 291 100.0
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 5.1e-141 504.6 291 90.4
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 2.1e-139 499.2 290 89.3
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 2.4e-138 495.7 291 88.7
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 2.4e-138 495.7 291 88.7
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 5.3e-138 494.6 292 88.4
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 9.0e-138 493.8 291 89.0
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 2.6e-137 492.3 291 88.0
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 9.3e-135 483.8 291 87.3
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 9.3e-135 483.8 291 87.3
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 9.3e-135 483.8 291 87.3
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 1.3e-133 479.9 291 86.3
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 1.9e-111 406.4 293 76.8
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 3.6e-94 349.0 298 66.1
BcaB06g28781 Brassica carinata HOM05D008587 ORTHO05D010485 4.3e-63 245.7 210 67.6
BolC4t27854H Brassica oleracea HOM05D008587 ORTHO05D010485 2.6e-44 183.3 130 75.4
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 1.7e-43 180.6 270 44.4
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 1.7e-32 144.1 263 40.3
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 1.7e-32 144.1 214 42.1
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 3.3e-31 139.8 210 44.8
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 1.2e-28 131.3 258 39.9
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 9.9e-28 128.3 277 36.5
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 9.9e-28 128.3 269 37.9
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 1.3e-27 127.9 258 39.5
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 2.7e-25 120.2 291 32.0
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 7.8e-25 118.6 232 37.9
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 1.7e-24 117.5 271 32.1
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 1.1e-23 114.8 286 34.3
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 1.5e-23 114.4 238 36.1
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 4.3e-23 112.8 235 36.6
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 3.6e-22 109.8 225 37.8
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 3.1e-21 106.7 168 38.7
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 3.1e-21 106.7 214 36.9
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 5.3e-21 105.9 262 36.3
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 2.6e-20 103.6 240 37.1
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 7.6e-20 102.1 281 33.5
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 2.1e-17 94.0 261 33.3
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 1.8e-16 90.9 213 39.9
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 8.7e-16 88.6 211 35.5
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 1.5e-15 87.8 201 33.8
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.5e-15 87.8 232 31.0
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.9e-15 87.4 230 31.7
Cfa000943 Carpinus fangiana HOM05D008587 ORTHO05D010485 5.6e-15 85.9 146 37.7
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 5.6e-15 85.9 201 33.3
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 1.4e-13 81.3 115 40.0
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 2.4e-13 80.5 213 32.9
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 1.2e-12 78.2 155 38.1
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 1.0e-11 75.1 159 34.0
BolC1t05877H Brassica oleracea HOM05D008587 ORTHO05D010485 1.7e-11 74.3 39 94.9
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 8.4e-11 72.0 116 33.6
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 4.6e-09 66.2 105 37.1
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 6.0e-09 65.9 105 39.0
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 6.0e-09 65.9 90 43.3
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.0e-08 65.1 106 40.6
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.0e-08 65.1 106 40.6
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.0e-08 65.1 94 43.6
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 3.0e-08 63.5 90 36.7
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 3.0e-08 63.5 117 39.3
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 5.1e-08 62.8 113 36.3
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 5.1e-08 62.8 147 34.7
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 5.1e-08 62.8 164 32.9
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 1.1e-07 61.6 144 31.9
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 1.1e-07 61.6 146 31.5
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 1.5e-07 61.2 147 32.7
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 1.5e-07 61.2 90 43.3
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 1.9e-07 60.8 128 31.2
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 2.5e-07 60.5 115 37.4
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 3.3e-07 60.1 88 42.0
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 3.3e-07 60.1 116 35.3
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 4.3e-07 59.7 143 32.9
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 4.3e-07 59.7 122 36.9
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 5.7e-07 59.3 64 42.2
CsaV3_1G032450 Cucumis sativus L. HOM05D030426 ORTHO05D029164 7.4e-07 58.9 109 36.7
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 7.4e-07 58.9 143 33.6
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 7.4e-07 58.9 101 33.7
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 9.6e-07 58.5 110 39.1
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 9.6e-07 58.5 116 34.5
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 1.3e-06 58.2 189 32.3
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 1.3e-06 58.2 146 30.8
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.3e-06 58.2 143 33.6
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 1.6e-06 57.8 110 38.2
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 2.1e-06 57.4 109 35.8
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 2.8e-06 57.0 135 33.3
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 2.8e-06 57.0 60 45.0
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 3.7e-06 56.6 116 35.3
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 4.8e-06 56.2 92 38.0
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 4.8e-06 56.2 143 32.9
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 4.8e-06 56.2 122 38.5
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 6.2e-06 55.8 105 33.3
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 6.2e-06 55.8 129 30.2
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 8.2e-06 55.5 144 29.9


User provided reference genes

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