Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.2e-258 896.0 444 100.0
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.5e-245 852.4 446 96.4
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 5.4e-243 844.0 450 93.8
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 4.1e-235 817.8 447 92.2
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 4.6e-234 814.3 448 91.5
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 7.8e-234 813.5 449 92.0
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.8e-230 802.4 471 87.3
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 4.0e-230 801.2 477 86.0
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 5.8e-229 797.3 476 87.0
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 3.1e-222 775.0 411 93.7
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 1.9e-219 765.8 449 85.7
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 8.1e-215 750.4 386 96.1
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 2.4e-203 712.2 470 77.4
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 1.5e-181 639.8 449 74.2
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.8e-180 635.2 413 77.2
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.9e-179 632.9 432 74.8
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 2.5e-179 632.5 435 73.6
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 4.2e-179 631.7 433 73.7
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.2e-178 630.2 393 79.9
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 1.6e-178 629.8 413 76.5
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 4.7e-178 628.2 432 73.8
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 4.7e-178 628.2 434 74.9
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 4.7e-178 628.2 434 75.3
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 6.1e-178 627.9 426 74.4
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 7.9e-178 627.5 428 75.2
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.4e-177 626.7 408 77.9
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.8e-177 626.3 427 74.5
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 3.9e-177 625.2 399 76.9
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 5.1e-177 624.8 414 76.6
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 6.7e-177 624.4 392 80.1
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 2.0e-176 622.9 420 75.2
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 2.0e-176 622.9 426 74.2
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 3.3e-176 622.1 393 78.4
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.3e-176 622.1 441 72.1
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 5.7e-176 621.3 437 72.8
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 7.4e-176 620.9 396 78.8
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 7.4e-176 620.9 438 73.7
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 7.4e-176 620.9 393 77.6
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.7e-175 619.8 417 75.1
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 1.4e-174 616.7 393 78.1
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.8e-174 616.3 393 77.6
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 5.3e-174 614.8 434 72.8
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 2.0e-173 612.8 427 74.0
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 2.0e-173 612.8 408 76.0
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 4.5e-173 611.7 416 74.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 4.5e-173 611.7 386 77.7
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.0e-172 610.5 393 76.6
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.7e-172 609.8 394 76.9
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 2.9e-172 609.0 393 76.3
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 5.0e-172 608.2 386 78.2
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 5.0e-172 608.2 394 77.2
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 5.0e-172 608.2 410 75.6
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.3e-169 599.4 423 72.3
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 9.7e-168 594.0 393 75.6
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 8.2e-167 590.9 434 71.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 5.3e-166 588.2 385 76.9
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 7.7e-165 584.3 423 71.2
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-164 583.6 365 79.5
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.3e-164 583.6 372 77.7
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 6.5e-164 581.3 483 63.6
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 9.4e-163 577.4 400 72.8
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 3.6e-162 575.5 469 64.4
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.8e-161 573.2 383 76.5
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 2.3e-161 572.8 394 73.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.7e-159 566.6 354 79.1
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.6e-157 560.1 377 75.6
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 4.2e-155 552.0 434 68.2
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.6e-154 550.1 530 57.7
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.8e-153 546.6 431 66.8
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 4.4e-152 542.0 404 70.3
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 7.5e-152 541.2 394 70.8
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 1.8e-150 536.6 402 69.4
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.5e-149 532.3 345 79.4
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 3.8e-148 528.9 401 66.1
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.6e-148 528.1 444 64.4
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 4.2e-147 525.4 402 66.9
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 2.4e-142 509.6 378 70.6
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.4e-142 509.6 385 65.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.2e-141 507.3 385 69.4
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.0e-140 504.2 412 63.3
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 7.3e-139 498.0 416 64.2
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 8.0e-138 494.6 391 66.8
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.4e-137 493.8 411 65.9
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.8e-137 493.4 407 65.6
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 8.9e-137 491.1 424 62.3
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 2.2e-135 486.5 293 83.3
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 3.5e-133 479.2 430 60.5
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.0e-133 478.4 402 64.4
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.3e-132 476.5 357 70.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.6e-125 453.8 357 67.5
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.3e-121 439.9 340 69.7
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.5e-115 420.6 400 55.2
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 2.6e-112 409.8 394 54.6
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 3.2e-110 402.9 243 82.7
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 2.3e-108 396.7 457 49.2
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.2e-102 376.3 257 75.1
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 4.2e-102 375.9 257 74.7
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 4.0e-89 332.8 222 76.6
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.1e-82 310.5 224 73.7
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.1e-81 306.6 221 73.3
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.7e-79 300.8 247 69.2
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.7e-79 300.8 247 69.2
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.7e-79 300.8 247 69.2
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 5.0e-79 299.3 204 71.6
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 4.8e-74 282.7 250 66.8
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 3.1e-73 280.0 236 67.4
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.3e-71 274.6 172 80.2
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 1.4e-70 271.2 530 36.6
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.9e-70 270.8 185 71.4
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.6e-69 266.5 185 69.7
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 7.4e-67 258.8 186 69.4
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.3e-66 258.1 155 82.6
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 1.8e-65 254.2 331 46.2
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 3.4e-64 250.0 179 70.9
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 1.7e-63 247.7 161 76.4
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.8e-63 246.5 155 80.6
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 6.3e-58 229.2 174 66.7
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 5.0e-55 219.5 124 83.1
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.1e-49 199.9 162 61.7
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 6.8e-44 182.6 146 65.1
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.3e-42 178.3 128 72.7
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 3.7e-42 176.8 130 66.2
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.0e-36 157.1 98 82.7
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 4.0e-36 156.8 98 82.7
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.0e-35 154.5 126 65.9
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 1.7e-34 151.4 92 78.3
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 3.7e-34 150.2 119 64.7
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.9e-31 140.6 144 50.7
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.0e-28 130.2 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.8e-25 121.3 121 56.2
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 4.6e-24 116.7 73 78.1
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.8e-20 104.8 86 58.1
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 6.8e-20 102.8 62 75.8
CARHR128200 Cardamine hirsuta HOM05D005057 ORTHO05D006570 3.4e-19 100.5 64 81.2
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.4e-17 95.1 73 65.8
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 3.2e-17 94.0 182 39.6
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 6.6e-15 86.3 161 36.6
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 7.3e-14 82.8 57 68.4
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 2.1e-13 81.3 132 40.9
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 3.3e-06 57.4 85 41.2


User provided reference genes

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