Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.3e-136 488.4 251 100.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.2e-127 459.9 249 92.8
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.2e-125 453.4 252 92.5
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.3e-124 449.9 249 89.6
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 8.3e-124 447.2 250 88.4
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 8.6e-121 437.2 249 87.6
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 5.6e-120 434.5 249 86.3
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 2.1e-119 432.6 255 85.5
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.0e-118 428.3 247 85.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 2.2e-116 422.5 249 84.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 2.2e-116 422.5 249 84.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 6.4e-116 421.0 252 83.3
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 8.3e-116 420.6 251 85.3
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 3.2e-115 418.7 251 84.9
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 3.2e-115 418.7 252 82.9
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 3.2e-115 418.7 251 84.9
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 9.2e-115 417.2 249 81.5
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 2.1e-114 416.0 249 83.5
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.2e-103 377.9 254 73.6
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-96 356.7 215 77.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 4.3e-96 355.1 215 75.8
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 3.6e-95 352.1 215 74.4
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.8e-92 342.0 221 73.3
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 3.8e-92 342.0 202 76.7
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.4e-91 340.1 223 70.4
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 221 73.3
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 222 73.4
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.9e-91 339.7 221 73.3
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 7.1e-91 337.8 202 76.2
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 7.1e-91 337.8 217 74.7
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 2.1e-90 336.3 248 64.5
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.1e-90 336.3 201 75.6
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.7e-90 335.9 202 73.8
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 4.6e-90 335.1 249 63.9
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.3e-89 333.6 208 74.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.3e-89 333.6 248 64.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.7e-89 333.2 246 65.9
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.7e-89 333.2 249 65.5
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.3e-89 332.8 204 72.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 2.3e-89 332.8 216 71.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.3e-89 332.8 215 71.2
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.9e-89 332.0 249 64.7
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.1e-89 331.6 217 71.0
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 5.1e-89 331.6 217 70.0
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.1e-88 330.5 226 71.2
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.5e-88 330.1 217 69.1
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.9e-88 329.7 202 73.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.9e-88 329.7 243 65.0
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-88 329.7 243 65.0
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-88 329.7 243 65.0
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.9e-88 329.7 217 70.5
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.9e-88 329.7 216 69.9
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.9e-88 329.7 213 72.3
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.9e-88 329.7 213 72.3
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 2.5e-88 329.3 226 68.1
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.5e-88 329.3 226 68.1
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.5e-88 329.3 217 69.6
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.3e-88 328.9 250 65.2
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.3e-88 328.9 220 70.0
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 4.3e-88 328.6 202 74.8
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.3e-88 328.6 241 64.3
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 4.3e-88 328.6 202 73.8
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 9.6e-88 327.4 207 73.4
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.6e-87 326.6 202 72.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.6e-87 326.6 223 69.1
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.1e-87 326.2 221 67.4
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.1e-87 326.2 246 63.8
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.1e-87 326.2 243 64.2
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.8e-87 325.9 217 67.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.8e-87 325.9 222 69.4
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.8e-87 325.1 217 70.5
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 6.2e-87 324.7 221 69.7
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 6.2e-87 324.7 200 73.5
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 6.2e-87 324.7 217 67.3
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.1e-86 323.9 220 68.6
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.1e-86 323.9 202 73.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.8e-86 323.2 222 70.3
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 3.1e-86 322.4 210 69.0
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 4.0e-86 322.0 231 64.5
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 4.0e-86 322.0 216 69.4
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 6.9e-86 321.2 210 69.0
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 9.0e-86 320.9 204 72.5
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.5e-85 320.1 200 73.0
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.5e-85 320.1 219 68.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.5e-85 320.1 228 64.5
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 7.6e-85 317.8 215 66.5
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.3e-84 317.0 200 71.0
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.3e-84 317.0 217 67.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.2e-84 316.2 220 74.5
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 2.2e-84 316.2 237 64.1
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 8.4e-84 314.3 256 61.7
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 8.4e-84 314.3 224 66.5
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.9e-83 313.2 210 68.1
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.2e-82 310.5 204 68.6
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.6e-82 308.5 209 67.9
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.5e-80 303.5 191 75.9
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.9e-80 303.1 207 66.7
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.3e-80 302.4 239 64.4
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 7.4e-80 301.2 217 64.1
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.6e-79 300.1 214 65.4
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.1e-79 299.7 193 69.9
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.1e-79 299.7 290 52.8
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.9e-75 286.6 172 74.4
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.2e-75 285.8 211 60.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.2e-75 285.4 222 64.4
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.5e-74 282.3 315 46.7
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 4.6e-74 282.0 204 62.7
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.3e-72 275.4 204 64.7
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 5.0e-68 261.9 158 77.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 7.7e-61 238.0 154 77.9
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.7e-60 236.9 313 45.0
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-59 234.2 278 47.1
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 1.1e-59 234.2 136 77.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 7.9e-58 228.0 169 71.0
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 3.9e-57 225.7 191 51.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 5.1e-57 225.3 247 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.4e-54 217.2 189 50.3
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.4e-53 212.6 228 49.6
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.4e-51 207.2 146 63.7
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.7e-50 203.0 119 78.2
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.8e-46 190.3 190 43.7
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 2.1e-42 176.8 106 77.4
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.8e-41 173.7 247 38.5
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.2e-41 172.2 99 80.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 8.8e-41 171.4 99 82.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 7.5e-40 168.3 115 67.8
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 5.9e-37 158.7 186 51.6
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.2e-36 156.8 99 70.7
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 6.5e-36 155.2 102 65.7
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 6.5e-36 155.2 97 74.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.1e-34 150.2 87 83.9
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.2e-31 140.2 141 51.1
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 9.1e-30 134.8 69 95.7
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 9.1e-30 134.8 92 77.2
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.2e-29 134.4 89 78.7
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.7e-29 133.3 72 91.7
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.7e-29 133.3 72 91.7
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 4.5e-29 132.5 88 78.4
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 4.5e-29 132.5 84 67.9
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 8.8e-25 118.2 101 52.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.5e-24 117.5 203 32.5
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 3.7e-23 112.8 80 63.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 8.6e-20 101.7 102 52.0
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 5.7e-16 89.0 44 97.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 5.7e-16 89.0 44 97.7
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.2e-15 87.0 176 27.8
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.1e-14 84.7 82 53.7
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 2.0e-13 80.5 73 52.1
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.5e-13 79.7 48 77.1
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 7.8e-13 78.6 117 28.2
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 3.9e-12 76.3 51 66.7
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 5.0e-12 75.9 55 70.9
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.9e-11 73.9 56 69.6
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 9.5e-11 71.6 35 97.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 9.5e-11 71.6 35 97.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 4.7e-10 69.3 35 94.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.1e-09 66.6 42 71.4
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.2e-09 65.9 54 51.9
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 5.8e-08 62.4 45 62.2
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.3e-07 61.2 64 43.8
BcaC03g15720 Brassica carinata HOM05D000589 ORTHO05D039119 1.4e-06 57.8 34 79.4


User provided reference genes

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