Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 3.5e-82 308.1 145 100.0
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 9.8e-77 290.0 145 91.7
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.0e-73 280.0 145 89.0
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 1.8e-70 269.2 145 85.5
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 1.3e-68 263.1 148 85.1
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 3.7e-68 261.5 148 84.5
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 8.3e-68 260.4 148 84.5
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 1.1e-67 260.0 148 83.1
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.4e-67 259.6 148 84.5
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 4.1e-67 258.1 148 83.8
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 3.5e-66 255.0 145 80.7
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 1.1e-51 206.8 151 62.9
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 4.1e-51 204.9 151 62.9
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 5.4e-51 204.5 151 63.6
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 5.1e-49 198.0 151 60.9
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.9e-48 196.1 143 60.8
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 3.3e-48 195.3 147 60.5
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 4.3e-48 194.9 154 60.4
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 9.6e-48 193.7 152 58.6
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 9.6e-48 193.7 143 59.4
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.6e-47 193.0 152 58.6
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.6e-47 193.0 152 60.5
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.6e-47 193.0 148 65.5
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.8e-47 192.2 151 58.3
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 4.7e-47 191.4 153 58.2
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 6.2e-47 191.0 150 58.0
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 8.1e-47 190.7 152 58.6
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 8.1e-47 190.7 151 59.6
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.1e-46 190.3 145 60.0
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 1.8e-46 189.5 151 58.3
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 1.8e-46 189.5 143 58.7
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 3.1e-46 188.7 149 59.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 3.1e-46 188.7 150 59.3
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.1e-46 188.7 151 58.9
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 1.2e-45 186.8 151 57.0
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 2.0e-45 186.0 152 57.2
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 4.4e-45 184.9 151 57.6
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 5.8e-45 184.5 145 57.9
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 5.8e-45 184.5 147 60.5
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 7.6e-45 184.1 144 57.6
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 7.6e-45 184.1 148 59.5
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 7.6e-45 184.1 148 57.4
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 9.9e-45 183.7 154 55.2
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.7e-44 183.0 152 55.3
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 3.8e-44 181.8 143 55.9
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 8.4e-44 180.6 150 55.3
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 8.4e-44 180.6 145 57.9
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 7.1e-43 177.6 150 58.0
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.6e-42 176.4 146 57.5
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 2.1e-42 176.0 152 53.3
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 2.1e-42 176.0 145 57.2
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 3.5e-42 175.3 146 54.8
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 7.8e-42 174.1 146 54.1
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 7.8e-42 174.1 146 54.1
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.0e-41 173.7 144 58.3
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 3.0e-41 172.2 146 53.4
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 3.0e-41 172.2 145 55.2
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 3.0e-41 172.2 145 55.9
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.0e-41 172.2 148 53.4
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.0e-41 172.2 148 53.4
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 5.1e-41 171.4 150 54.7
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 3.3e-40 168.7 150 53.3
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 3.3e-40 168.7 150 53.3
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 9.6e-40 167.2 144 53.5
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 1.6e-39 166.4 148 52.0
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 4.8e-39 164.9 151 54.3
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 5.3e-38 161.4 146 50.7
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 5.8e-37 157.9 118 60.2
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.7e-36 156.4 150 54.0
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.7e-36 156.4 147 51.0
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 3.8e-36 155.2 155 52.3
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 4.9e-36 154.8 146 47.9
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 1.6e-34 149.8 155 51.0
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 2.3e-33 146.0 120 56.7
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 1.3e-31 140.2 157 47.1
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.8e-31 138.3 113 55.8
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.4e-30 136.7 125 53.6
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.8e-30 136.3 116 56.9
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.0e-21 106.3 102 50.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 2.0e-21 106.3 135 40.7
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 2.2e-20 102.8 56 83.9
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 4.3e-16 88.6 148 34.5
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 6.3e-15 84.7 105 43.8
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 1.4e-14 83.6 141 36.9
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 4.5e-13 78.6 56 62.5
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.6e-10 68.9 60 51.7


User provided reference genes

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