Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G29650 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 5.5e-126 454.5 263 100.0
AT2G33850 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 2.8e-114 415.6 268 88.4
Carub.0004s1555 Capsella rubella HOM05D009159 ORTHO05D005331 2.1e-85 319.7 290 73.4
Thhalv10017182m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 2.0e-80 303.1 271 66.1
CARHR128000 Cardamine hirsuta HOM05D009159 ORTHO05D005331 4.5e-80 302.0 273 67.0
Sp4g16260 Schrenkiella parvula HOM05D009159 ORTHO05D005331 5.2e-76 288.5 271 62.7
A04p26070 Brassica napus HOM05D009159 ORTHO05D005331 8.6e-71 271.2 276 69.9
BraA04t18109Z Brassica rapa HOM05D009159 ORTHO05D005331 1.2e-67 260.8 277 69.0
BcaC02g07762 Brassica carinata HOM05D009159 ORTHO05D005331 3.9e-55 219.2 207 76.8
C04p63410 Brassica napus HOM05D009159 ORTHO05D005331 1.4e-52 210.7 279 60.9
BolC4t27816H Brassica oleracea HOM05D009159 ORTHO05D005331 1.4e-52 210.7 279 60.9
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 5.2e-52 208.8 324 45.7
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 1.6e-48 197.2 317 43.8
BolC3t19771H Brassica oleracea HOM05D009159 ORTHO05D005331 6.6e-47 191.8 313 43.1
BcaC01g00047 Brassica carinata HOM05D009159 ORTHO05D005331 2.5e-46 189.9 313 42.8
A08p25580 Brassica napus HOM05D009159 ORTHO05D005331 2.1e-45 186.8 317 43.5
BraA08t34510Z Brassica rapa HOM05D009159 ORTHO05D005331 2.1e-45 186.8 317 43.5
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 2.8e-45 186.4 314 42.4
BcaB07g32463 Brassica carinata HOM05D009159 ORTHO05D005331 4.0e-44 182.6 343 40.5
Sp1g24680 Schrenkiella parvula HOM05D009159 ORTHO05D005331 5.2e-44 182.2 331 42.6
BcaB03g13928 Brassica carinata HOM05D009159 ORTHO05D005331 6.4e-42 175.3 325 40.9
AL1G42030 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 3.2e-41 172.9 358 39.1
CARHR027910 Cardamine hirsuta HOM05D009159 ORTHO05D005331 5.6e-38 162.2 346 38.4
C05p27410 Brassica napus HOM05D009159 ORTHO05D005331 1.8e-36 157.1 329 45.9
AT1G28400 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 1.5e-35 154.1 367 37.1
BcaC05g26859 Brassica carinata HOM05D009159 ORTHO05D005331 4.4e-35 152.5 330 45.2
BolC5t31456H Brassica oleracea HOM05D009159 ORTHO05D005331 8.4e-34 148.3 330 44.8
A09p37640 Brassica napus HOM05D009159 ORTHO05D005331 9.2e-33 144.8 351 42.2
BraA09t39274Z Brassica rapa HOM05D009159 ORTHO05D005331 9.2e-33 144.8 351 42.2
Aa31LG9G13750 Aethionema arabicum HOM05D009159 ORTHO05D005331 1.2e-32 144.4 272 40.8
Carub.0001s2688 Capsella rubella HOM05D009159 ORTHO05D005331 1.1e-30 137.9 366 35.2
THA.LOC104814229 Tarenaya hassleriana HOM05D009159 ORTHO05D005331 4.9e-26 122.5 271 39.5
THA.LOC104820566 Tarenaya hassleriana HOM05D009159 ORTHO05D005331 6.0e-24 115.5 277 36.1
Aa31LG6G10320 Aethionema arabicum HOM05D009159 ORTHO05D005331 7.9e-16 88.6 337 30.6
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 7.6e-11 72.0 243 33.7
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 1.3e-10 71.2 284 32.4
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.3e-10 71.2 241 32.4
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 2.9e-10 70.1 267 30.0
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 7.1e-09 65.5 290 27.9
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.2e-08 64.7 242 38.0
Sp2g03920 Schrenkiella parvula HOM05D009159 ORTHO05D005331 1.6e-08 64.3 153 35.9
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 3.5e-08 63.2 273 35.2
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 3.5e-08 63.2 273 35.2
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.0e-07 61.6 272 36.8
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 2.3e-07 60.5 230 30.4
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 3.0e-07 60.1 273 29.3
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 3.9e-07 59.7 255 33.3
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 5.1e-07 59.3 247 31.6
Cpa.g.sc27.8 Carica papaya HOM05D007160 ORTHO05D005331 6.7e-07 58.9 315 34.0
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 6.7e-07 58.9 237 30.8
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 6.7e-07 58.9 277 32.1
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 8.7e-07 58.5 240 28.3
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 1.9e-06 57.4 260 35.8
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 2.5e-06 57.0 286 28.7
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 3.3e-06 56.6 278 30.9
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 5.6e-06 55.8 276 31.9
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 9.6e-06 55.1 81 45.7


User provided reference genes

Program Settings