Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 4.4e-102 374.8 213 100.0
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 5.3e-95 351.3 213 90.6
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.8e-90 336.3 215 87.9
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 2.6e-86 322.4 213 82.2
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 9.3e-84 313.9 215 81.4
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.3e-82 310.1 214 79.9
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 2.0e-78 296.2 213 78.9
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 2.5e-76 289.3 213 82.2
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 6.5e-69 264.6 211 70.6
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 3.6e-67 258.8 206 72.3
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 3.9e-66 255.4 216 69.0
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 3.9e-66 255.4 186 78.5
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 5.7e-65 251.5 213 66.2
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.1e-63 247.3 213 64.8
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 1.1e-63 247.3 195 70.8
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.7e-61 240.0 211 64.9
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 2.1e-59 233.0 206 63.6
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 3.6e-59 232.3 209 62.2
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 1.4e-58 230.3 198 64.1
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.4e-58 230.3 215 61.9
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 3.0e-58 229.2 213 61.5
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 3.0e-58 229.2 212 60.4
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 6.7e-58 228.0 213 62.4
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 2.0e-57 226.5 216 65.3
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.3e-57 225.7 215 60.5
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 3.3e-57 225.7 221 58.4
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 3.3e-57 225.7 213 59.2
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 7.4e-57 224.6 151 80.8
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 7.4e-57 224.6 205 62.9
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 1.3e-56 223.8 209 58.4
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.3e-56 223.8 210 61.4
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.7e-56 223.4 211 60.2
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 8.2e-56 221.1 213 61.5
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.1e-55 220.7 213 59.2
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 2.4e-55 219.5 213 59.6
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.1e-55 219.2 151 79.5
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.3e-55 218.4 207 61.4
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 5.3e-55 218.4 215 58.6
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.0e-54 216.5 224 57.1
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 2.6e-54 216.1 170 67.6
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 3.5e-54 215.7 178 64.6
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.5e-54 215.3 207 59.4
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.5e-54 215.3 207 59.4
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.9e-54 214.9 207 60.9
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.3e-53 213.8 212 59.4
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.7e-53 213.4 178 64.0
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.7e-53 213.4 178 64.0
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.7e-53 213.4 215 57.7
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 2.2e-53 213.0 213 56.8
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 2.5e-52 209.5 218 58.7
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 4.2e-52 208.8 215 57.7
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 7.2e-52 208.0 213 57.7
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 2.1e-51 206.5 213 56.3
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 3.6e-51 205.7 213 60.1
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 3.6e-51 205.7 205 60.0
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 4.7e-51 205.3 185 61.1
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 8.0e-51 204.5 170 64.1
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.3e-50 203.0 216 55.6
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.3e-50 203.0 211 55.5
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 3.0e-50 202.6 210 55.2
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 4.0e-50 202.2 215 56.7
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 4.0e-50 202.2 193 61.7
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 5.2e-50 201.8 225 53.8
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 6.7e-50 201.4 213 55.9
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 8.8e-50 201.1 213 54.9
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.1e-49 200.7 213 56.3
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.3e-49 199.1 198 58.6
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 3.3e-49 199.1 216 55.1
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 7.5e-49 198.0 189 58.7
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 7.5e-49 198.0 211 56.4
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 7.5e-49 198.0 179 62.6
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 1.7e-48 196.8 213 55.9
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.8e-48 196.1 175 62.9
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 3.7e-48 195.7 226 52.7
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.7e-46 189.5 212 57.1
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 7.7e-46 188.0 215 54.9
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.9e-45 186.0 171 63.7
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 2.5e-44 183.0 181 55.2
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 7.2e-44 181.4 213 57.3
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 2.1e-43 179.9 213 55.9
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.0e-42 177.6 146 66.4
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.2e-41 174.1 154 62.3
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.6e-41 172.9 144 63.9
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 7.5e-41 171.4 256 45.3
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 9.8e-41 171.0 155 62.6
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.7e-40 170.2 142 64.1
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.5e-38 162.5 217 49.8
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 5.9e-38 161.8 184 48.9
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 7.7e-38 161.4 211 48.3
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.2e-36 156.0 147 64.6
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 4.2e-36 155.6 171 50.9
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 5.5e-36 155.2 213 46.5
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 7.2e-36 154.8 162 56.2
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.6e-35 153.7 206 43.7
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 2.1e-35 153.3 155 56.1
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.0e-34 151.0 169 55.0
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 1.8e-34 150.2 156 57.1
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 5.2e-34 148.7 186 54.3
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 5.7e-33 145.2 217 41.9
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 5.7e-33 145.2 217 51.2
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 7.0e-31 138.3 176 54.0
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 9.2e-31 137.9 213 49.8
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 1.3e-29 134.0 137 52.6
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 2.5e-28 129.8 220 42.7
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 5.2e-26 122.1 206 48.5
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 6.8e-26 121.7 170 53.5
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 2.3e-21 106.7 191 34.6
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 1.6e-19 100.5 213 42.3
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 6.2e-19 98.6 132 49.2
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 1.8e-18 97.1 95 60.0
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 2.0e-14 83.6 182 38.5
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 5.0e-13 79.0 70 61.4
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 1.5e-12 77.4 45 88.9
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 1.5e-12 77.4 82 57.3
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 5.6e-12 75.5 90 52.2
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.2e-11 74.3 186 32.3
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 1.6e-11 73.9 209 31.1
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.2e-11 72.0 105 44.8
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 1.8e-10 70.5 69 58.0
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 8.9e-10 68.2 105 41.9
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 2.9e-08 63.2 110 34.5
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.0e-06 55.5 79 46.8


User provided reference genes

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