Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.2e-81 305.8 184 100.0
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.5e-77 293.1 190 96.3
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 8.6e-70 267.3 187 92.5
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.3e-69 265.0 184 92.4
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 6.4e-65 251.1 197 85.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-64 250.0 199 85.4
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 5.4e-64 248.1 197 85.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.7e-62 243.0 190 85.3
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.3e-62 242.7 204 81.9
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-62 242.7 204 81.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 6.6e-62 241.1 202 81.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 6.6e-62 241.1 202 82.7
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-61 239.2 197 84.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.8e-60 235.7 210 80.0
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 6.2e-60 234.6 190 83.7
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 4.0e-59 231.9 215 77.7
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 6.9e-59 231.1 184 85.3
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 9.0e-59 230.7 184 84.8
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-58 230.3 208 73.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 4.4e-58 228.4 217 76.0
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 5.8e-58 228.0 184 84.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-56 223.4 210 76.7
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 7.1e-56 221.1 171 81.9
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.5e-55 218.8 179 83.2
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.5e-50 201.8 189 66.7
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.9e-50 200.7 184 63.0
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 6.4e-49 198.0 180 77.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.9e-48 196.4 194 66.0
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.6e-47 191.8 189 70.9
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 6.0e-47 191.4 187 73.3
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.5e-45 186.0 181 74.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.5e-45 186.0 178 69.1
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 4.0e-43 178.7 182 63.2
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 9.0e-43 177.6 187 58.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.0e-42 176.4 190 66.3
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.6e-42 176.0 192 67.2
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 5.8e-42 174.9 197 56.9
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-41 173.3 180 54.4
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.9e-41 172.6 199 58.8
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 8.4e-41 171.0 187 54.5
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 4.2e-40 168.7 191 49.2
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.5e-40 168.3 214 55.6
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 9.3e-40 167.5 180 53.3
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 9.3e-40 167.5 180 53.3
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-39 167.2 182 60.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.6e-39 166.8 204 58.8
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.6e-39 166.8 197 48.7
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.1e-39 166.4 194 52.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 3.5e-39 165.6 185 57.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 3.5e-39 165.6 192 60.4
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 3.5e-39 165.6 192 60.4
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 4.6e-39 165.2 213 59.6
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 7.9e-39 164.5 198 57.6
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.0e-38 164.1 202 60.4
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.8e-38 163.3 196 49.0
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.3e-38 162.9 182 61.5
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 5.1e-38 161.8 193 54.4
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.5e-37 160.2 190 54.2
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.5e-37 160.2 199 52.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.9e-37 159.8 197 54.3
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.5e-37 159.5 186 58.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.3e-37 159.1 183 61.2
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 3.3e-37 159.1 195 47.2
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 5.7e-37 158.3 182 59.9
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 5.7e-37 158.3 198 61.1
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 7.4e-37 157.9 184 65.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 7.4e-37 157.9 206 61.2
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.4e-37 157.9 190 54.7
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.6e-36 156.8 197 59.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.6e-36 156.8 216 58.3
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.1e-36 156.4 213 53.1
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.1e-36 156.4 213 53.1
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.1e-36 156.4 199 59.3
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.1e-36 156.4 215 58.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 2.1e-36 156.4 189 59.8
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.8e-36 156.0 189 63.0
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.8e-36 156.0 200 58.5
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.7e-36 155.6 192 64.6
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 4.8e-36 155.2 216 56.9
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 6.2e-36 154.8 195 62.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.4e-35 153.7 203 44.3
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.8e-35 153.3 180 56.1
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-35 152.9 180 50.6
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-35 152.9 180 50.6
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.4e-35 152.9 180 50.6
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.4e-35 152.9 215 55.3
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.1e-35 152.5 193 44.6
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.1e-35 152.1 194 53.1
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-34 150.2 167 53.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.5e-34 150.2 194 52.1
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.6e-34 149.4 178 47.2
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.6e-34 149.4 191 51.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.4e-34 149.1 190 60.5
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.4e-34 149.1 196 47.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 4.5e-34 148.7 211 46.0
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.5e-34 148.7 203 54.2
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 7.6e-34 147.9 225 48.9
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.0e-33 147.5 188 51.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.3e-33 147.1 199 48.2
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.3e-33 147.1 199 50.8
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.7e-33 146.7 205 48.3
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.9e-33 146.0 186 61.3
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 5.0e-33 145.2 208 52.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 5.0e-33 145.2 194 59.8
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.0e-33 145.2 177 52.0
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 6.5e-33 144.8 225 49.3
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 6.5e-33 144.8 202 55.9
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-32 144.1 245 51.4
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.5e-32 142.9 188 45.7
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 4.2e-32 142.1 206 49.5
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 5.5e-32 141.7 185 56.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 9.3e-32 141.0 238 48.7
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.6e-31 140.2 222 39.6
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 2.1e-31 139.8 208 46.6
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 2.1e-31 139.8 208 43.8
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 3.5e-31 139.0 184 53.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 3.5e-31 139.0 194 59.3
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 4.6e-31 138.7 181 56.4
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 4.6e-31 138.7 194 58.2
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.9e-31 137.9 196 51.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.3e-30 136.3 208 46.6
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.0e-30 136.0 187 43.3
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-30 135.6 166 63.9
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-30 135.6 166 63.9
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 3.9e-30 135.6 198 40.9
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 5.1e-30 135.2 184 61.4
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.7e-30 134.8 199 52.3
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 8.7e-30 134.4 188 61.2
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 8.7e-30 134.4 166 62.0
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 8.7e-30 134.4 166 62.0
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 8.7e-30 134.4 183 44.3
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.5e-29 133.7 202 56.9
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.5e-29 133.7 234 50.9
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.9e-29 133.3 228 40.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.9e-29 133.3 180 40.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 5.7e-29 131.7 205 41.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 5.7e-29 131.7 193 57.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.4e-29 131.3 197 53.3
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.7e-29 131.0 191 59.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.3e-28 130.6 216 39.4
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-28 130.2 189 43.4
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 3.7e-28 129.0 178 41.6
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 3.7e-28 129.0 185 42.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.8e-28 128.6 225 37.3
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.1e-27 125.9 212 39.2
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.2e-26 124.0 234 42.3
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.2e-26 124.0 234 35.9
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 2.6e-26 122.9 225 37.8
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.7e-26 121.3 203 53.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.1e-24 117.5 180 45.0
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.4e-24 117.1 129 60.5
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.9e-24 116.7 153 42.5
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 4.6e-23 112.1 166 59.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.9e-23 111.3 220 49.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.5e-21 106.3 177 45.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 5.7e-21 105.1 125 50.4
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.7e-21 105.1 176 41.5
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.4e-21 104.8 173 41.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.1e-19 100.9 117 47.9
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.4e-19 99.8 103 80.6
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.5e-18 97.1 184 35.3
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.8e-17 92.4 218 35.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.2e-16 89.0 214 30.8
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-15 86.7 145 53.8
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 5.1e-14 82.0 218 29.4
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.6e-13 79.7 222 29.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.8e-12 75.5 176 31.2
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.1e-11 74.3 91 45.1
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.4e-11 73.9 112 45.5
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.1e-11 72.4 202 43.1
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 5.3e-11 72.0 202 43.1
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 9.1e-11 71.2 202 43.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.5e-10 68.9 141 30.5
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 7.2e-08 61.6 67 49.3
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 1.2e-07 60.8 42 59.5
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 2.7e-07 59.7 42 59.5
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 1.8e-06 57.0 79 39.2
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 4.0e-06 55.8 45 55.6
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 6.7e-06 55.1 41 53.7
SMO347G0423 Selaginella moellendorffii HOM05D013579 ORTHO05D004077 6.7e-06 55.1 47 53.2
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.8e-06 54.7 156 26.3


User provided reference genes

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