Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 0.0e+00 1323.5 700 100.0
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 0.0e+00 1233.4 700 93.3
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 0.0e+00 1174.1 700 88.0
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 0.0e+00 1155.2 699 85.7
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 0.0e+00 1152.9 702 85.9
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 0.0e+00 1132.9 709 84.5
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1088.2 700 83.0
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 0.0e+00 1084.7 700 81.7
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1077.8 698 81.7
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.8e-312 1074.7 698 81.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.8e-310 1068.1 699 81.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 4.4e-308 1060.8 698 79.2
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 7.6e-292 1006.9 701 78.0
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 7.6e-292 1006.9 701 77.0
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.7e-291 1005.7 701 77.5
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 2.2e-291 1005.4 701 77.9
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.7e-283 979.2 707 76.1
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 3.9e-280 968.0 703 71.3
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.8e-278 961.8 703 71.1
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 2.1e-265 919.1 683 73.6
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.0e-232 808.5 702 60.0
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 6.8e-232 807.7 702 60.0
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 7.5e-231 804.3 701 60.1
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-230 803.5 702 61.5
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 7.0e-229 797.7 703 59.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.7e-228 795.8 702 59.4
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.0e-227 793.9 659 62.7
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-227 793.5 702 61.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 7.2e-226 787.7 701 57.9
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-223 780.0 692 59.0
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.7e-222 776.5 702 58.0
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 1.1e-221 773.9 498 80.5
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 9.2e-221 770.8 702 58.1
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.5e-220 768.5 682 60.7
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.3e-219 766.1 707 58.1
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 2.3e-219 766.1 706 58.5
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 3.8e-219 765.4 679 66.7
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.8e-217 759.2 701 57.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 4.7e-217 758.4 703 57.5
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.2e-207 727.2 693 55.4
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.4e-207 725.3 705 56.5
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.8e-207 724.9 705 56.5
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 9.8e-207 724.2 633 58.8
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.2e-206 723.0 703 56.6
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.2e-204 717.2 694 54.5
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 2.0e-204 716.5 682 55.4
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 4.6e-204 715.3 800 50.4
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 7.8e-204 714.5 694 55.9
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.3e-203 713.8 705 54.6
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.3e-203 713.0 684 54.5
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.5e-202 710.3 661 57.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 4.7e-201 705.3 702 54.4
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 6.2e-201 704.9 762 52.0
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.1e-200 702.6 665 55.8
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.0e-200 702.2 705 57.2
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 6.8e-200 701.4 691 54.4
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.2e-198 696.4 698 53.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 2.4e-197 693.0 698 51.4
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 3.5e-196 689.1 684 56.0
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.6e-196 688.7 672 56.8
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 7.8e-196 688.0 621 56.2
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.3e-195 686.4 635 56.9
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 6.6e-195 684.9 685 53.3
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 7.3e-194 681.4 681 52.1
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 3.6e-193 679.1 741 50.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.0e-191 673.3 716 51.5
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 4.4e-191 672.2 680 55.0
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-189 667.5 659 54.2
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.4e-189 667.2 679 51.3
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.4e-189 666.4 750 49.6
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.2e-189 664.5 767 48.9
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 4.6e-188 662.1 645 53.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 4.6e-188 662.1 750 49.1
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.0e-188 661.8 750 49.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.3e-187 660.6 767 48.6
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 1.3e-187 660.6 757 50.1
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 3.0e-187 659.4 698 50.4
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 5.1e-187 658.7 689 54.0
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 8.6e-187 657.9 692 51.0
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.5e-186 657.1 705 50.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.5e-186 656.4 710 49.3
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 3.3e-186 656.0 682 51.2
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 4.3e-186 655.6 728 50.5
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 9.6e-186 654.4 705 53.0
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.2e-185 654.1 707 49.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.6e-185 652.5 700 52.6
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 6.2e-185 651.7 677 54.1
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 3.1e-184 649.4 709 49.5
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 8.9e-184 647.9 710 48.7
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.5e-183 647.1 653 53.1
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 5.8e-183 645.2 571 61.1
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 8.4e-182 641.3 657 49.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 2.4e-181 639.8 704 49.7
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.3e-181 637.9 666 52.3
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.3e-181 637.9 680 52.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 9.3e-181 637.9 704 49.4
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 9.3e-181 637.9 658 52.6
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 1.0e-179 634.4 704 49.4
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 2.3e-179 633.3 709 49.6
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 5.1e-179 632.1 671 50.8
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.3e-178 628.2 662 50.0
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 7.3e-178 628.2 695 49.9
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 9.6e-178 627.9 682 51.0
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 7.6e-175 618.2 634 54.1
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.8e-174 615.9 656 52.0
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.9e-173 613.6 668 49.6
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.9e-173 613.6 703 50.1
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 3.2e-173 612.8 593 56.7
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.9e-170 603.6 627 51.5
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.6e-169 599.4 668 50.0
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.6e-169 599.4 676 49.1
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 3.1e-168 596.3 660 49.8
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 4.0e-168 595.9 653 49.6
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.2e-166 590.1 697 48.2
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 3.8e-166 589.3 698 46.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.9e-166 589.0 646 50.6
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.2e-164 584.3 598 52.5
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.6e-164 583.9 696 46.7
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 7.9e-164 581.6 661 48.1
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 8.1e-161 571.6 678 48.1
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 2.4e-160 570.1 666 46.5
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.2e-159 567.8 621 49.9
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.7e-158 563.9 638 50.3
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 2.7e-156 556.6 689 47.9
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.3e-155 554.3 693 44.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-154 551.2 696 47.3
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 3.7e-153 546.2 662 44.7
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.2e-151 541.2 492 55.9
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.4e-149 534.3 656 46.0
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 3.4e-143 513.1 699 43.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.1e-141 508.1 494 53.4
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 2.7e-140 503.4 476 56.9
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-139 501.1 709 46.0
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.5e-138 497.7 422 62.3
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 7.7e-127 458.8 505 48.9
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 5.5e-117 426.0 741 37.5
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.0e-115 421.8 403 55.1
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.7e-111 405.6 665 37.9
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 5.5e-109 399.4 667 36.6
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.0e-107 393.3 685 36.4
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 8.8e-107 392.1 659 37.2
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 5.7e-106 389.4 668 37.0
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.1e-100 370.9 657 36.1
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 9.8e-98 362.1 768 33.9
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.6e-95 354.8 633 36.3
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 8.0e-92 342.4 770 32.2
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.0e-92 342.4 670 35.4
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 2.7e-87 327.4 514 38.5
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 4.6e-87 326.6 666 35.6
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.0e-86 325.5 808 31.2
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 6.8e-83 312.8 519 38.2
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.6e-82 310.8 533 38.1
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.4e-81 306.2 362 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.6e-76 291.6 756 30.4
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.8e-76 290.8 332 50.0
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.2e-71 275.4 525 35.0
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.3e-70 271.2 232 60.3
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 4.3e-69 266.9 228 61.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-67 262.3 501 34.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 3.8e-57 227.3 334 39.2
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.3e-32 142.9 286 34.3
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.4e-30 139.0 108 64.8
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 4.8e-28 130.6 66 89.4
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.3e-27 127.1 116 53.4
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 7.4e-21 106.7 203 33.0
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.5e-18 99.0 66 71.2
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.6e-15 89.0 116 46.6
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.4e-11 75.1 145 37.2
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 4.1e-11 74.3 152 34.9
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.6e-10 72.4 49 73.5
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.9e-10 70.5 60 56.7
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 8.5e-09 66.6 54 63.0
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 1.6e-07 62.4 52 57.7
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.7e-07 61.6 54 50.0


User provided reference genes

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