Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 0.0e+00 1450.6 758 100.0
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 0.0e+00 1354.3 758 93.3
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 0.0e+00 1341.3 758 92.9
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 0.0e+00 1333.9 758 92.7
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 0.0e+00 1318.9 759 90.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 0.0e+00 1293.1 756 89.4
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1283.5 754 87.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1280.8 754 87.5
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1276.9 777 85.7
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1270.0 777 84.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1259.2 756 86.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 0.0e+00 1224.2 756 84.3
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1213.0 765 83.0
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1209.5 774 82.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1206.8 773 82.4
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1193.7 731 85.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1182.5 729 84.9
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 0.0e+00 1180.2 754 80.9
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1176.4 757 82.2
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.3e-281 973.0 759 65.5
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.9e-281 971.8 762 66.4
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 5.0e-281 971.1 775 65.5
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.8e-278 962.6 758 66.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 9.7e-277 956.8 759 66.3
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.9e-272 942.6 768 63.8
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.6e-271 939.5 758 64.8
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 4.7e-271 937.9 768 63.4
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.5e-269 932.9 759 64.0
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 2.6e-269 932.2 759 63.4
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 5.9e-266 921.0 761 63.9
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 7.7e-266 920.6 755 63.7
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.9e-264 916.0 766 64.1
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 2.3e-262 909.1 760 63.3
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 6.8e-262 907.5 759 62.8
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.6e-261 905.6 767 62.3
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.5e-261 904.0 758 62.5
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.7e-260 902.9 762 62.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.9e-260 901.4 775 61.4
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.9e-256 889.4 748 62.7
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 4.3e-256 888.3 759 61.3
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 7.3e-256 887.5 764 61.3
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 3.6e-255 885.2 731 63.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 3.6e-255 885.2 759 61.4
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 6.1e-255 884.4 768 61.7
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.0e-254 883.6 765 61.2
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-254 882.5 758 60.9
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 4.0e-254 881.7 766 60.7
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.5e-253 879.8 808 59.2
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.4e-253 878.2 770 60.0
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 5.8e-253 877.9 770 60.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 7.8e-250 867.5 784 59.4
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.1e-248 863.6 765 59.5
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 2.5e-248 862.4 764 59.6
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 5.6e-248 861.3 732 62.2
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 7.5e-245 850.9 717 62.1
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.7e-244 849.7 736 60.5
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.7e-242 842.4 761 58.3
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.0e-241 840.5 765 57.8
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.7e-241 839.7 758 57.7
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.0e-241 839.0 758 60.3
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.9e-240 836.3 764 58.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 3.3e-240 835.5 760 57.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 9.5e-240 833.9 765 57.8
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 6.2e-239 831.2 763 57.9
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.1e-238 830.5 775 57.2
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 5.2e-238 828.2 761 58.7
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 6.8e-238 827.8 765 57.0
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.7e-236 822.0 771 57.1
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 7.1e-235 817.8 762 56.4
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.9e-233 812.0 682 62.2
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 3.3e-232 808.9 773 57.4
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 7.3e-232 807.7 764 55.9
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 2.8e-231 805.8 763 55.2
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 9.9e-229 797.3 762 55.9
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 7.3e-224 781.2 762 55.5
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 9.6e-224 780.8 765 56.3
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 9.6e-224 780.8 785 53.5
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 1.9e-219 766.5 797 52.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.0e-217 760.8 770 54.2
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.0e-217 759.2 736 55.4
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 1.4e-214 750.4 578 67.8
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.5e-213 745.3 576 66.3
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.4e-211 740.3 740 55.9
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.9e-208 729.9 729 55.7
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.4e-208 728.0 761 51.8
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 7.6e-205 718.0 755 52.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 7.4e-200 701.4 568 64.8
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 7.4e-200 701.4 757 52.6
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 4.8e-199 698.7 758 49.5
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 3.1e-198 696.0 567 64.4
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 6.5e-196 688.3 568 63.9
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.4e-195 687.2 566 63.6
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 2.1e-194 683.3 758 50.9
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 5.1e-193 678.7 579 59.9
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.0e-190 667.9 762 48.6
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 4.2e-187 659.1 575 60.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.6e-186 656.0 627 55.3
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.0e-184 650.2 761 49.0
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 9.7e-184 647.9 571 59.7
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 4.1e-182 642.5 747 49.4
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 3.8e-180 636.0 661 52.5
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 3.3e-176 622.9 519 63.6
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 9.7e-176 621.3 532 61.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.8e-167 592.4 461 66.4
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.1e-166 589.7 532 60.5
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.4e-161 574.3 761 44.5
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 3.0e-161 573.2 505 60.6
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 7.7e-149 531.9 616 47.7
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 6.1e-146 522.3 783 38.8
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.9e-145 518.5 529 53.7
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.5e-125 453.4 440 54.8
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 7.8e-125 452.2 561 48.1
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 3.3e-123 446.8 335 67.5
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 9.9e-120 435.3 485 50.1
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-113 414.8 328 65.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.1e-106 391.0 811 31.3
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.1e-105 388.7 286 68.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.9e-102 377.9 287 67.2
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.3e-100 371.7 380 54.5
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.1e-97 362.1 482 45.4
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.6e-93 348.2 734 31.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 7.4e-91 339.3 281 62.3
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.0e-87 328.9 277 63.9
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.1e-82 311.2 230 68.7
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 1.5e-80 305.1 754 29.3
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.6e-69 268.5 345 41.7
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 4.4e-67 260.4 177 72.3
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 6.5e-63 246.5 755 26.6
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 7.2e-62 243.0 216 57.9
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 5.9e-56 223.4 182 61.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 3.0e-52 211.1 217 50.7
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.5e-48 197.2 241 45.6
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 2.8e-42 177.9 132 70.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 3.7e-42 177.6 237 44.7
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 8.3e-42 176.4 183 49.2
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.8e-39 167.5 419 31.5
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.5e-38 164.9 419 31.3
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.0e-27 128.6 106 66.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 2.4e-25 121.7 85 72.9
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.6e-21 109.0 85 64.7
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 2.8e-21 108.2 135 43.0
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 8.9e-20 103.2 88 62.5
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-17 95.5 76 64.5
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 3.9e-15 87.8 122 45.9
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.6e-15 86.7 215 29.3
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-14 85.9 69 62.3
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-10 72.8 87 39.1
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 3.7e-10 71.2 450 22.4
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 3.0e-07 61.6 90 44.4
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 4.3e-06 57.8 70 44.3


User provided reference genes

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