Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.9e-163 579.3 335 100.0
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.1e-138 496.1 341 84.5
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 3.2e-131 472.2 273 88.6
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.1e-123 447.2 306 77.8
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 7.9e-122 441.0 314 75.8
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.5e-117 425.2 338 73.1
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 7.8e-93 344.7 333 61.0
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 3.8e-92 342.4 332 60.8
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 5.0e-92 342.0 333 61.6
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 3.3e-91 339.3 333 61.0
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 9.8e-88 327.8 354 56.8
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.7e-87 325.9 312 60.3
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 4.6e-85 318.9 315 62.2
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 8.6e-76 288.1 322 56.2
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 3.3e-75 286.2 275 61.8
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 9.9e-64 248.1 351 49.3
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 4.9e-63 245.7 358 48.6
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.7e-60 237.3 324 49.1
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 5.2e-57 225.7 326 47.5
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 2.6e-56 223.4 339 46.6
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 6.0e-53 212.2 191 61.8
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 5.1e-52 209.1 366 43.2
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.9e-51 207.2 274 47.1
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 3.6e-50 203.0 270 49.3
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 2.0e-48 197.2 257 49.4
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.4e-48 196.4 150 74.0
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 5.8e-48 195.7 279 47.0
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.7e-47 194.1 285 44.6
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 4.9e-47 192.6 270 47.8
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 6.4e-47 192.2 285 47.4
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 8.4e-47 191.8 323 48.0
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.4e-46 191.0 278 47.1
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 9.3e-46 188.3 286 45.1
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.0e-44 184.9 282 44.7
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 2.3e-44 183.7 279 45.2
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 5.1e-44 182.6 276 46.0
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 5.1e-44 182.6 276 46.0
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.9e-43 180.6 323 41.2
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.3e-42 177.9 287 41.5
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.3e-42 177.9 288 42.0
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 3.1e-41 173.3 299 44.1
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 3.1e-41 173.3 246 46.3
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 4.0e-41 172.9 249 46.2
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 5.3e-41 172.6 167 59.3
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 6.9e-41 172.2 287 44.3
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.2e-40 171.4 287 44.6
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.5e-40 171.0 285 45.3
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.5e-40 171.0 139 72.7
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 5.8e-40 169.1 157 60.5
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.3e-39 167.9 264 42.4
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.3e-39 167.9 281 42.7
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.3e-39 167.9 281 43.4
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.7e-39 167.5 258 42.6
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.7e-39 167.5 260 44.6
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 2.2e-39 167.2 298 42.3
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 3.8e-39 166.4 253 45.5
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 3.8e-39 166.4 267 43.4
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 3.8e-39 166.4 280 42.1
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 8.4e-39 165.2 252 44.0
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.6e-37 161.0 260 43.8
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.7e-37 160.2 268 41.0
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 3.5e-37 159.8 268 41.4
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 4.6e-37 159.5 261 41.8
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 6.0e-37 159.1 243 44.9
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 1.0e-36 158.3 168 57.7
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.9e-36 156.4 250 43.2
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 5.1e-36 156.0 282 39.4
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 6.7e-36 155.6 161 54.7
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 8.7e-36 155.2 272 40.8
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-35 154.8 161 54.7
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.5e-35 154.5 263 43.3
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.3e-35 153.3 161 54.7
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 3.3e-35 153.3 276 40.9
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 3.3e-35 153.3 258 41.9
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 7.4e-35 152.1 150 57.3
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.4e-35 152.1 150 57.3
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.4e-35 152.1 150 57.3
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 9.6e-35 151.8 250 42.4
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 2.1e-34 150.6 276 39.1
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.8e-34 150.2 165 52.7
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 3.7e-34 149.8 203 45.3
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 8.2e-34 148.7 254 41.3
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-33 148.3 253 40.7
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.1e-33 146.7 259 41.3
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 3.1e-33 146.7 320 36.9
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 9.0e-33 145.2 306 37.9
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.6e-32 143.7 297 38.7
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 3.4e-32 143.3 137 56.9
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 5.8e-32 142.5 278 38.5
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 5.8e-32 142.5 304 35.2
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 5.8e-32 142.5 295 39.3
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 5.8e-32 142.5 306 39.5
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 2.9e-31 140.2 255 39.6
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 8.4e-31 138.7 249 40.2
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.1e-30 138.3 283 36.7
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 9.3e-30 135.2 253 40.7
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 1.6e-29 134.4 183 44.8
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 2.1e-29 134.0 331 33.8
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 2.7e-29 133.7 165 47.3
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 6.0e-29 132.5 275 37.1
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 1.0e-28 131.7 257 41.6
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.0e-28 130.2 291 37.5
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 6.7e-28 129.0 281 37.0
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-26 124.8 89 76.4
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.8e-26 123.6 188 45.2
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 8.2e-26 122.1 256 34.8
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 1.4e-25 121.3 93 72.0
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.1e-25 119.8 314 34.4
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 6.9e-25 119.0 273 37.7
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-24 118.2 208 40.9
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 2.6e-24 117.1 87 73.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 3.4e-24 116.7 274 38.3
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.5e-24 116.3 250 39.6
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.3e-23 114.8 203 41.4
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.7e-23 114.4 131 48.9
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.5e-22 110.5 251 35.1
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 9.4e-22 108.6 109 58.7
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 6.1e-21 105.9 257 32.7
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.0e-20 105.1 282 33.7
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 2.5e-19 100.5 83 68.7
Thhalv10009331m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.4e-17 94.0 197 39.6
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 6.9e-17 92.4 127 47.2
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.6e-16 90.5 174 37.4
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 3.4e-16 90.1 227 34.8
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 5.9e-16 89.4 283 32.2
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.0e-15 88.6 262 30.2
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.3e-15 88.2 327 29.4
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.7e-15 87.8 289 29.8
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 3.8e-15 86.7 175 37.1
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 5.0e-15 86.3 91 61.5
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 4.2e-14 83.2 236 33.5
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 3.6e-13 80.1 88 48.9
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 3.6e-13 80.1 197 32.5
BcaB03g16453 Brassica carinata HOM05D004925 ORTHO05D005643 4.7e-13 79.7 69 69.6
BcaB03g16452 Brassica carinata HOM05D004925 ORTHO05D005643 1.8e-12 77.8 66 71.2
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 6.7e-12 75.9 161 36.6
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.1e-11 75.1 135 38.5
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 3.3e-11 73.6 135 42.2
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 2.8e-10 70.5 64 56.2
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 3.1e-09 67.0 142 34.5
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 5.3e-09 66.2 73 50.7
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 1.0e-07 62.0 100 37.0
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 1.1e-06 58.5 227 29.1
BcaB03g16454 Brassica carinata HOM05D004925 ORTHO05D005643 7.2e-06 55.8 52 71.2


User provided reference genes

Program Settings