Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 3.1e-193 678.3 354 100.0
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 7.7e-184 647.1 354 95.8
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 2.2e-178 629.0 354 93.5
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 3.5e-176 621.7 351 91.2
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 5.2e-172 607.8 352 89.2
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 3.7e-170 601.7 351 90.0
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 1.1e-169 600.1 351 89.5
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.4e-169 599.7 350 89.1
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 1.8e-169 599.4 351 89.7
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.4e-169 599.0 351 89.5
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 5.4e-169 597.8 350 88.0
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.6e-168 596.3 350 88.9
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.8e-164 582.8 374 82.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.2e-163 580.1 390 79.0
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 2.9e-154 548.9 352 84.1
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.8e-148 529.6 290 94.1
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 1.8e-148 529.6 290 93.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 4.9e-146 521.5 352 76.7
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 5.4e-121 438.3 335 67.2
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 7.9e-120 434.5 338 66.6
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 3.0e-119 432.6 263 88.2
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 5.1e-119 431.8 354 65.3
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.6e-118 427.6 336 66.4
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.6e-117 426.8 360 62.8
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 6.9e-116 421.4 350 62.0
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.5e-115 420.2 336 65.5
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.4e-115 419.1 354 60.7
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 2.2e-114 416.4 354 61.9
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.9e-114 416.0 337 64.1
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.9e-114 416.0 355 62.3
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 8.4e-114 414.5 351 62.7
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 3.2e-113 412.5 343 63.8
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.5e-113 411.8 336 65.5
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.1e-112 409.8 351 61.5
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 2.1e-112 409.8 350 60.6
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 2.1e-112 409.8 336 63.7
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 4.6e-112 408.7 355 61.4
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.6e-112 408.7 353 62.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.3e-111 407.1 350 61.1
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 2.3e-111 406.4 352 62.2
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 3.3e-110 402.5 349 60.5
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 9.6e-110 401.0 336 62.8
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.3e-109 400.6 351 59.0
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.3e-109 400.6 364 59.1
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-109 400.2 375 58.9
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 4.8e-109 398.7 346 60.7
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.4e-108 397.1 341 60.4
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 6.9e-108 394.8 339 61.1
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.4e-107 392.5 340 57.9
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.5e-107 392.1 353 57.8
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.0e-106 391.0 352 58.5
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 1.3e-106 390.6 354 57.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.7e-106 390.2 351 59.3
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 8.4e-106 387.9 351 57.5
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 5.5e-105 385.2 347 59.9
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 1.6e-104 383.6 355 58.0
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-103 380.2 336 61.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.8e-103 380.2 354 55.6
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 6.7e-103 378.3 357 56.9
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.1e-102 377.5 336 58.3
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.5e-102 377.1 345 55.9
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 3.3e-102 375.9 374 54.3
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 5.7e-102 375.2 339 59.3
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 4.8e-101 372.1 350 55.7
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.1e-100 370.9 336 56.8
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.8e-100 370.2 341 57.8
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 5.3e-100 368.6 334 57.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 5.3e-100 368.6 342 57.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 5.3e-100 368.6 341 57.5
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 6.9e-100 368.2 341 57.5
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 2.0e-99 366.7 290 64.1
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.4e-99 365.9 353 56.4
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 4.5e-99 365.5 338 55.9
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.0e-98 364.4 351 53.8
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-98 363.2 458 47.6
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 2.2e-98 363.2 380 51.8
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.9e-98 362.8 348 55.2
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 3.8e-98 362.5 334 57.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.8e-98 362.5 359 54.3
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 6.5e-98 361.7 414 47.3
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 9.4e-97 357.8 383 52.2
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.2e-96 357.5 351 54.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 8.8e-95 351.3 318 59.1
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.5e-94 350.5 338 53.8
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.5e-94 350.5 356 52.2
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.9e-94 350.1 352 53.1
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.3e-93 347.4 336 54.5
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.2e-93 346.7 300 62.3
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.8e-92 343.6 309 60.5
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.1e-92 342.4 338 56.5
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.0e-91 340.1 302 61.3
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.9e-89 333.6 325 55.4
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.9e-89 333.6 298 60.1
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.7e-88 329.7 351 51.3
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 3.6e-88 329.3 295 58.0
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.4e-87 327.4 304 56.2
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.9e-87 325.9 349 52.4
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 8.8e-87 324.7 316 57.6
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.5e-86 323.9 317 54.3
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 2.6e-86 323.2 278 59.7
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.6e-86 323.2 304 55.6
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 7.4e-86 321.6 465 42.4
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 8.2e-85 318.2 349 51.0
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.6e-83 313.2 335 49.0
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 3.4e-83 312.8 264 61.4
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 5.0e-82 308.9 332 52.1
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 8.5e-82 308.1 316 53.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 1.1e-81 307.8 346 50.3
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.2e-80 304.3 564 36.3
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.8e-79 300.4 366 47.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.7e-77 292.7 224 66.5
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 9.1e-76 288.1 407 42.8
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 1.3e-74 284.3 263 57.0
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.7e-74 283.9 348 46.0
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 8.8e-71 271.6 313 47.9
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.6e-70 270.0 345 45.2
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.3e-69 265.4 297 48.8
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.1e-68 261.5 348 44.5
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.5e-67 259.6 348 46.3
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.7e-66 257.3 310 47.1
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 5.5e-65 252.3 306 46.4
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.0e-59 233.8 283 55.1
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 8.0e-56 221.9 158 68.4
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.0e-55 221.5 234 51.3
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 1.7e-53 214.2 327 39.1
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 5.4e-52 209.1 156 66.0
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.6e-50 201.8 191 59.7
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.2e-48 198.0 353 33.7
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 4.0e-47 193.0 127 72.4
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 6.8e-47 192.2 374 34.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 9.8e-46 188.3 206 50.5
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.1e-44 184.9 351 35.9
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 1.1e-44 184.9 161 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.0e-43 180.6 314 35.7
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.8e-40 170.2 165 54.5
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 4.4e-38 162.9 294 35.7
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 6.4e-37 159.1 175 48.6
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.1e-36 156.4 112 68.8
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.0e-34 151.8 113 65.5
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.0e-34 151.8 113 65.5
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 4.0e-31 139.8 104 64.4
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 3.4e-30 136.7 233 38.2
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-29 134.0 130 60.0
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 2.4e-23 114.0 128 50.0
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 4.4e-22 109.8 136 48.5
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-20 105.1 70 80.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-20 105.1 135 42.2
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 3.2e-20 103.6 72 77.8
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 7.1e-20 102.4 70 78.6
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 9.2e-20 102.1 72 76.4
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 9.2e-20 102.1 133 49.6
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 9.2e-20 102.1 133 49.6
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.8e-19 99.0 118 45.8
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 2.3e-18 97.4 73 76.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 8.7e-18 95.5 105 50.5
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 6.2e-16 89.4 55 87.3
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 6.2e-16 89.4 55 87.3
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 9.0e-15 85.5 86 50.0
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 2.6e-14 84.0 295 26.1
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 7.3e-09 65.9 71 54.9
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.4e-07 61.6 242 24.4
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 6.9e-07 59.3 63 54.0
BolC6t36015H Brassica oleracea HOM05D004482 ORTHO05D005212 2.0e-06 57.8 41 73.2


User provided reference genes

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