Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 2.7e-155 552.0 279 100.0
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 1.3e-149 533.1 279 97.1
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 1.5e-145 519.6 279 94.3
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 8.0e-144 513.8 278 92.8
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.1e-137 493.4 280 88.6
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 7.3e-137 490.7 279 90.0
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 7.3e-137 490.7 280 88.2
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 7.3e-137 490.7 279 90.0
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 7.3e-137 490.7 280 88.2
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.2e-136 490.0 279 87.8
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 1.2e-136 490.0 272 90.8
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 1.2e-136 490.0 272 90.8
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 5.2e-135 484.6 280 86.8
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 1.7e-133 479.6 279 85.7
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.2e-131 473.4 240 96.2
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 3.3e-129 465.3 240 95.0
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 4.3e-129 464.9 240 95.0
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 7.3e-129 464.2 254 89.0
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 9.5e-129 463.8 240 93.8
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 7.1e-124 447.6 277 80.1
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 9.2e-124 447.2 240 91.2
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 2.7e-123 445.7 281 79.0
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 5.1e-122 441.4 279 77.4
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.5e-121 439.9 280 78.9
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.9e-121 439.5 279 77.4
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 3.3e-121 438.7 279 77.4
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 3.3e-121 438.7 290 76.6
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 7.3e-121 437.6 275 78.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 9.6e-121 437.2 278 78.1
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-120 436.8 280 78.6
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.2e-120 436.8 275 78.9
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 3.6e-120 435.3 280 78.6
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 3.6e-120 435.3 277 77.6
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 4.7e-120 434.9 284 77.1
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.7e-120 434.9 284 77.1
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 4.7e-120 434.9 284 77.1
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.1e-119 432.2 284 76.4
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 3.1e-119 432.2 282 78.4
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 4.0e-119 431.8 281 76.5
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 5.2e-119 431.4 273 78.4
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 5.2e-119 431.4 249 83.1
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 8.9e-119 430.6 275 78.5
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.0e-118 429.5 259 80.3
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.4e-118 428.7 251 82.1
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 4.4e-118 428.3 264 79.2
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 5.8e-118 427.9 279 75.6
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 1.3e-117 426.8 253 81.8
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.7e-117 426.4 254 81.5
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.7e-117 426.4 256 81.6
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 2.2e-117 426.0 255 82.4
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.9e-117 425.6 240 84.2
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 3.8e-117 425.2 281 76.9
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 4.9e-117 424.9 276 77.5
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 6.4e-117 424.5 285 75.8
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 8.4e-117 424.1 274 75.9
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 1.1e-116 423.7 252 82.1
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.4e-116 422.5 242 83.9
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.2e-115 420.2 268 77.2
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 1.6e-115 419.9 280 73.6
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 2.7e-115 419.1 266 75.9
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 2.7e-115 419.1 260 77.7
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 7.8e-115 417.5 238 82.4
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.0e-114 417.2 256 78.1
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.7e-114 416.4 255 80.8
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.7e-114 416.4 246 82.5
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.3e-114 416.0 281 73.3
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 3.0e-114 415.6 240 82.1
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 5.1e-114 414.8 282 74.5
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 8.7e-114 414.1 283 74.9
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.5e-113 413.3 233 82.0
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-113 413.3 238 81.1
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.5e-113 413.3 246 78.5
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 1.5e-113 413.3 238 81.9
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.3e-113 412.1 279 72.8
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.6e-112 409.8 249 77.5
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.8e-112 409.1 236 81.8
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 4.8e-112 408.3 287 72.8
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 6.2e-112 407.9 234 80.8
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 8.1e-112 407.5 294 71.4
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.1e-111 407.1 240 79.6
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.4e-111 406.8 284 73.6
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 5.3e-111 404.8 281 72.6
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.2e-110 403.7 269 72.5
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 5.8e-110 401.4 249 78.3
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.3e-109 400.2 254 76.0
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 8.4e-109 397.5 283 71.4
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.1e-108 397.1 222 84.2
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.2e-108 395.6 272 70.6
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 3.2e-108 395.6 281 71.9
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 4.2e-108 395.2 254 74.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-107 393.7 246 76.0
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.6e-107 393.3 284 70.4
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 6.0e-107 391.3 239 75.7
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 6.0e-107 391.3 280 71.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.0e-106 390.6 245 76.7
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 3.0e-106 389.0 248 74.6
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.7e-106 387.9 239 76.2
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 4.3e-105 385.2 401 54.1
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 5.6e-105 384.8 241 75.1
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.6e-104 383.3 275 69.5
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 4.8e-104 381.7 237 74.7
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 2.4e-103 379.4 239 76.2
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 5.3e-103 378.3 276 69.2
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 7.6e-102 374.4 282 66.3
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.3e-101 373.6 225 77.3
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.2e-99 367.1 223 76.2
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 4.0e-95 352.1 268 64.2
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 7.6e-94 347.8 260 66.5
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.8e-93 345.5 243 69.1
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 5.5e-92 341.7 225 72.4
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 5.5e-92 341.7 274 63.5
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 3.3e-89 332.4 239 66.5
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 4.3e-89 332.0 241 64.3
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.1e-87 327.4 189 82.5
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 2.4e-87 326.2 254 62.6
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 6.7e-82 308.1 235 62.1
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 5.7e-81 305.1 214 75.2
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.4e-79 300.4 238 59.7
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.7e-77 293.5 283 57.2
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 2.5e-76 289.7 224 64.7
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 2.5e-76 289.7 247 60.7
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 4.2e-76 288.9 175 77.7
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 2.8e-72 276.2 209 65.1
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 3.8e-69 265.8 221 59.3
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 6.1e-67 258.5 279 52.3
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.3e-61 240.7 254 51.2
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 5.2e-58 228.8 168 69.6
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.2e-57 227.6 171 61.4
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-56 223.4 245 49.8
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 3.1e-55 219.5 135 78.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 6.5e-53 211.8 124 82.3
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 3.2e-52 209.5 230 44.3
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 4.5e-46 189.1 125 73.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 7.7e-46 188.3 106 78.3
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.3e-45 186.8 219 44.3
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 4.0e-42 176.0 221 41.6
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-37 161.0 115 71.3
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 8.9e-34 148.3 124 58.9
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 4.4e-33 146.0 87 75.9
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 5.7e-33 145.6 143 58.0
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 8.3e-32 141.7 164 50.0
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 1.1e-26 124.8 97 70.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.5e-25 120.9 254 32.7
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 4.9e-24 115.9 97 58.8
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 7.0e-23 112.1 64 78.1
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 4.9e-16 89.4 86 51.2
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-13 81.6 62 64.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-13 81.3 182 36.8
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-10 70.9 70 57.1
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 5.8e-09 65.9 68 57.4
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 6.4e-08 62.4 243 25.5
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.4e-07 60.5 225 25.3
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 9.2e-07 58.5 200 31.5
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 1.6e-06 57.8 232 24.1
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.7e-06 57.0 232 25.0
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 4.6e-06 56.2 206 28.6
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 6.0e-06 55.8 28 82.1


User provided reference genes

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