Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 3.4e-50 202.2 149 100.0
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.6e-42 176.0 149 92.6
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 2.5e-37 159.5 106 80.2
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 5.4e-32 141.7 86 87.2
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 1.6e-28 130.2 84 79.8
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 1.1e-27 127.5 85 78.8
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 3.1e-27 125.9 82 79.3
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 9.0e-27 124.4 82 78.0
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 9.0e-27 124.4 86 72.1
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 1.2e-26 124.0 87 75.9
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.2e-26 124.0 82 78.0
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 1.2e-26 124.0 87 75.9
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 2.0e-26 123.2 106 66.0
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 3.4e-26 122.5 85 75.3
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 3.4e-26 122.5 85 75.3
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 3.4e-26 122.5 85 75.3
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 9.9e-26 120.9 85 76.5
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.1e-21 107.5 85 62.4
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 7.4e-13 78.2 82 51.2
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 6.9e-11 71.6 81 45.7
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 1.2e-10 70.9 83 47.0
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 1.7e-09 67.0 82 45.1
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 1.7e-09 67.0 88 44.3
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 8.5e-09 64.7 78 46.2
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 1.1e-08 64.3 82 42.7
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.1e-08 64.3 82 43.9
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 1.1e-08 64.3 86 44.2
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.1e-08 64.3 82 45.1
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 1.4e-08 63.9 82 45.1
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 1.4e-08 63.9 82 43.9
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 1.9e-08 63.5 79 43.0
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 2.5e-08 63.2 78 47.4
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.2e-08 62.8 82 41.5
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 3.2e-08 62.8 80 46.2
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.2e-08 62.4 82 43.9
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 5.5e-08 62.0 85 43.5
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.2e-07 60.8 82 39.0
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.2e-07 60.8 78 37.2
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.2e-07 60.8 78 35.9
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 1.2e-07 60.8 78 35.9
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 1.2e-07 60.8 85 38.8
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 1.6e-07 60.5 76 44.7
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 2.1e-07 60.1 80 38.8
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 2.1e-07 60.1 83 42.2
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 2.7e-07 59.7 78 39.7
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.6e-07 59.3 79 40.5
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.6e-07 59.3 79 40.5
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 4.6e-07 58.9 82 41.5
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 4.6e-07 58.9 86 39.5
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 6.1e-07 58.5 78 42.3
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 7.9e-07 58.2 78 39.7
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.0e-06 57.8 82 34.1
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.0e-06 57.8 78 44.9
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.8e-06 57.0 82 37.8
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 2.3e-06 56.6 82 42.7
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 3.0e-06 56.2 80 37.5
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.0e-06 56.2 77 42.9
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 3.0e-06 56.2 77 37.7
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 3.0e-06 56.2 84 39.3
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 3.9e-06 55.8 83 39.8
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.9e-06 55.8 84 40.5
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 3.9e-06 55.8 82 39.0
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 5.1e-06 55.5 82 42.7
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 8.8e-06 54.7 78 41.0
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 8.8e-06 54.7 78 42.3


User provided reference genes

Program Settings