Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 1.7e-48 195.7 98 100.0
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 5.1e-45 184.1 98 94.9
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 1.1e-39 166.4 96 87.5
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 1.9e-39 165.6 99 87.9
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 6.9e-34 147.1 95 76.8
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 9.1e-34 146.7 106 72.6
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.2e-33 146.4 100 76.0
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.2e-33 146.4 100 76.0
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 7.7e-33 143.7 106 70.8
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 1.0e-32 143.3 98 75.5
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.3e-32 142.9 98 74.5
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 2.2e-32 142.1 99 76.8
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 1.1e-31 139.8 100 73.0
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 9.4e-31 136.7 100 72.0
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 2.7e-30 135.2 107 70.1
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 3.6e-30 134.8 101 72.3
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 4.7e-30 134.4 101 73.3
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 1.4e-29 132.9 105 70.5
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 1.4e-29 132.9 105 70.5
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 6.7e-29 130.6 96 66.7
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 1.0e-24 116.7 95 58.9
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 1.3e-24 116.3 94 61.7
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 5.0e-24 114.4 93 57.0
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 8.5e-24 113.6 68 85.3
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.9e-23 112.5 93 57.0
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 1.9e-23 112.5 93 57.0
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 5.5e-23 110.9 94 55.3
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.2e-22 109.8 94 58.5
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.6e-22 109.4 94 58.5
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 8.0e-22 107.1 95 57.9
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 1.0e-21 106.7 97 57.7
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.0e-21 106.7 92 54.3
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 1.8e-21 105.9 95 57.9
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 4.0e-21 104.8 94 57.4
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 1.5e-20 102.8 95 55.8
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 5.7e-20 100.9 94 58.5
CARHR125220 Cardamine hirsuta HOM05D000219 ORTHO05D021059 5.7e-20 100.9 77 68.8
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 2.8e-19 98.6 94 55.3
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 3.7e-19 98.2 95 54.7
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.7e-19 98.2 94 55.3
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 1.4e-18 96.3 94 55.3
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 1.4e-18 96.3 95 54.7
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 2.4e-18 95.5 95 54.7
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 4.1e-18 94.7 94 54.3
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 4.1e-18 94.7 95 58.9
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 5.3e-18 94.4 96 58.3
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 7.0e-18 94.0 98 55.1
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 1.2e-17 93.2 94 48.9
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 1.2e-17 93.2 94 48.9
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 1.6e-17 92.8 94 56.4
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 2.0e-17 92.4 94 54.3
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 2.6e-17 92.0 95 57.9
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 2.6e-17 92.0 97 54.6
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 2.6e-17 92.0 95 53.7
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 5.9e-17 90.9 94 52.1
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 7.7e-17 90.5 97 52.6
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 7.7e-17 90.5 94 53.2
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 1.0e-16 90.1 94 50.0
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.3e-16 89.7 94 52.1
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 1.7e-16 89.4 89 58.4
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 2.2e-16 89.0 78 55.1
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 2.9e-16 88.6 94 54.3
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 2.9e-16 88.6 96 56.2
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 5.0e-16 87.8 93 51.6
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 6.5e-16 87.4 93 49.5
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 6.5e-16 87.4 93 50.5
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 6.5e-16 87.4 95 52.6
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 8.5e-16 87.0 94 50.0
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 8.5e-16 87.0 93 50.5
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.1e-15 86.7 94 50.0
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 1.5e-15 86.3 93 49.5
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 1.9e-15 85.9 95 45.3
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 1.9e-15 85.9 94 46.8
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 3.2e-15 85.1 94 45.7
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 1.2e-14 83.2 94 43.6
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.2e-14 83.2 94 52.1
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 1.6e-14 82.8 98 45.9
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 1.6e-14 82.8 55 72.7
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.1e-14 82.4 94 52.1
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.1e-14 82.4 93 49.5
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 2.7e-14 82.0 94 48.9
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.7e-14 82.0 134 39.6
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 3.6e-14 81.6 93 47.3
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 3.6e-14 81.6 64 64.1
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 3.6e-14 81.6 94 47.9
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 3.6e-14 81.6 93 45.2
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 6.1e-14 80.9 94 51.1
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 6.1e-14 80.9 93 49.5
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 8.0e-14 80.5 95 49.5
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 1.0e-13 80.1 94 45.7
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 1.4e-13 79.7 96 49.0
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.4e-13 79.7 94 50.0
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.4e-13 79.7 93 43.0
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 1.8e-13 79.3 93 46.2
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 2.3e-13 79.0 93 48.4
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 4.0e-13 78.2 96 47.9
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 5.2e-13 77.8 94 45.7
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.8e-13 77.4 51 74.5
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 8.8e-13 77.0 113 41.6
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 1.2e-12 76.6 51 74.5
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.2e-12 76.6 96 47.9
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.2e-12 76.6 63 65.1
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 2.6e-12 75.5 100 40.0
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 2.6e-12 75.5 93 46.2
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 2.6e-12 75.5 79 53.2
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 4.4e-12 74.7 93 45.2
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 5.7e-12 74.3 94 43.6
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 9.8e-12 73.6 94 43.6
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 6.3e-11 70.9 94 44.7
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 8.3e-11 70.5 95 46.3
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 8.3e-11 70.5 52 69.2
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 1.1e-10 70.1 94 44.7
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 1.8e-10 69.3 94 46.8
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 2.4e-10 68.9 94 43.6
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 2.4e-10 68.9 94 43.6
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 4.1e-10 68.2 94 45.7
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 5.4e-10 67.8 94 44.7
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 7.0e-10 67.4 94 37.2
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 7.0e-10 67.4 60 58.3
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 7.0e-10 67.4 94 42.6
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 7.0e-10 67.4 94 44.7
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 9.1e-10 67.0 94 44.7
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 1.2e-09 66.6 94 44.7
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 1.6e-09 66.2 55 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.0e-09 65.9 94 40.4
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 4.5e-09 64.7 95 45.3
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 1.3e-08 63.2 93 41.9
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.7e-08 62.8 56 60.7
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 6.5e-08 60.8 57 50.9
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 1.1e-07 60.1 96 32.3
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 4.2e-07 58.2 49 59.2
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 4.2e-07 58.2 52 55.8
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 5.5e-07 57.8 92 38.0
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 9.4e-07 57.0 96 33.3
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 2.7e-06 55.5 55 52.7
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 3.6e-06 55.1 93 37.6


User provided reference genes

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