Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.0e-32 143.3 98 100.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 8.8e-29 130.2 76 90.8
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 3.3e-28 128.3 91 100.0
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 7.4e-28 127.1 74 90.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.7e-24 115.9 76 78.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.7e-24 115.9 76 78.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.7e-24 115.9 76 78.9
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.2e-24 115.5 76 78.9
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.9e-24 115.2 76 81.6
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 6.5e-24 114.0 76 77.6
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 6.5e-24 114.0 76 77.6
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 9.7e-20 100.1 75 69.3
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.3e-19 97.4 68 73.5
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.1e-18 96.7 76 68.4
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.1e-18 95.1 76 65.8
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 4.5e-17 91.3 73 68.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 2.9e-16 88.6 69 69.6
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 5.0e-16 87.8 73 64.4
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 5.0e-16 87.8 73 64.4
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.5e-15 85.5 75 61.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.2e-15 85.1 73 60.3
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 4.2e-15 84.7 76 59.2
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 5.5e-15 84.3 66 68.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.2e-15 84.0 76 60.5
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.2e-15 84.0 73 60.3
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 9.4e-15 83.6 73 65.8
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 9.4e-15 83.6 66 68.2
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.6e-14 82.8 75 60.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.6e-14 81.6 72 59.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 3.6e-14 81.6 69 66.7
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.3e-13 79.0 73 61.6
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.3e-13 79.0 74 55.4
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.0e-13 78.2 67 61.2
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.0e-13 78.2 75 58.7
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 5.2e-13 77.8 74 55.4
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 6.8e-13 77.4 68 63.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 6.8e-13 77.4 73 58.9
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 6.8e-13 77.4 72 56.9
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 8.8e-13 77.0 76 56.6
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-12 76.6 74 59.5
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.5e-12 76.3 76 52.6
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 2.0e-12 75.9 67 62.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.6e-12 75.5 71 60.6
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 2.6e-12 75.5 70 58.6
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.6e-12 75.5 66 63.6
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.6e-12 75.5 66 63.6
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.4e-12 75.1 73 57.5
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.4e-12 74.7 72 59.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 4.4e-12 74.7 76 55.3
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 4.4e-12 74.7 69 56.5
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.7e-12 74.3 72 59.7
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 5.7e-12 74.3 71 59.2
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.7e-12 74.3 72 55.6
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 7.5e-12 73.9 66 63.6
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 7.5e-12 73.9 66 63.6
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 9.8e-12 73.6 67 62.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 9.8e-12 73.6 66 60.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 9.8e-12 73.6 66 62.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.8e-12 73.6 67 61.2
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 9.8e-12 73.6 73 57.5
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.3e-11 73.2 63 68.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.3e-11 73.2 67 61.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 1.3e-11 73.2 68 58.8
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.3e-11 73.2 69 60.9
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-11 73.2 71 56.3
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.7e-11 72.8 73 53.4
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.7e-11 72.8 73 53.4
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.7e-11 72.8 75 54.7
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.7e-11 72.8 71 56.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.7e-11 72.8 72 54.2
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.7e-11 72.8 65 66.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-11 72.4 67 56.7
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-11 72.4 67 56.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.2e-11 72.4 76 55.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.2e-11 72.4 70 58.6
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.2e-11 72.4 73 56.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.8e-11 72.0 70 55.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.8e-11 72.0 72 59.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.8e-11 72.0 67 56.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.8e-11 72.0 72 55.6
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.7e-11 71.6 73 54.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 3.7e-11 71.6 66 62.1
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.7e-11 71.6 72 54.2
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 3.7e-11 71.6 70 55.7
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 3.7e-11 71.6 76 55.3
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.3e-11 70.9 71 59.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 6.3e-11 70.9 69 58.0
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 6.3e-11 70.9 74 56.8
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 8.3e-11 70.5 67 58.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 8.3e-11 70.5 67 59.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.1e-10 70.1 73 56.2
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 1.1e-10 70.1 74 52.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.1e-10 70.1 73 56.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.4e-10 69.7 67 59.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.4e-10 69.7 69 59.4
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.4e-10 69.7 72 56.9
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.4e-10 69.7 73 53.4
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 2.4e-10 68.9 67 56.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.1e-10 68.6 68 55.9
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.1e-10 68.2 70 57.1
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 4.1e-10 68.2 74 50.0
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 4.1e-10 68.2 66 56.1
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.1e-10 68.2 63 60.3
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.4e-10 67.8 67 56.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 5.4e-10 67.8 67 53.7
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 9.1e-10 67.0 75 52.0
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 9.1e-10 67.0 69 59.4
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.6e-09 66.2 73 58.9
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.7e-09 65.5 74 50.0
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.7e-09 65.5 69 56.5
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.5e-09 64.7 70 57.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.5e-09 64.7 73 49.3
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 4.5e-09 64.7 58 62.1
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 4.5e-09 64.7 65 56.9
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 5.9e-09 64.3 56 66.1
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 5.9e-09 64.3 71 49.3
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 1.0e-08 63.5 56 60.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.3e-08 63.2 65 55.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.3e-08 63.2 69 55.1
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.3e-08 63.2 71 53.5
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.7e-08 62.8 56 62.5
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.7e-08 62.8 67 55.2
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-08 62.8 70 51.4
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.7e-08 62.8 68 52.9
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 2.2e-08 62.4 66 53.0
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.2e-08 62.4 66 54.5
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.9e-08 62.0 62 51.6
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.0e-08 61.2 75 52.0
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 6.5e-08 60.8 75 48.0
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.5e-08 60.8 77 46.8
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.9e-07 59.3 67 50.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 3.2e-07 58.5 64 54.7
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 5.5e-07 57.8 68 51.5
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 5.5e-07 57.8 67 49.3
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 9.4e-07 57.0 52 55.8
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.2e-06 56.6 64 57.8
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-06 56.6 66 51.5
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.6e-06 56.2 67 49.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.6e-06 56.2 65 55.4
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.1e-06 55.8 63 54.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.1e-06 55.8 65 52.3
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.1e-06 55.8 64 53.1
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 2.7e-06 55.5 66 54.5
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 3.6e-06 55.1 50 56.0
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.6e-06 55.1 67 47.8
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.6e-06 55.1 67 46.3
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 3.6e-06 55.1 58 53.4


User provided reference genes

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