Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.1e-78 296.6 150 100.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.8e-77 290.4 150 96.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.1e-74 282.3 150 92.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.2e-74 280.8 150 92.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.4e-73 279.6 150 92.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.4e-73 279.6 150 92.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-73 279.3 150 92.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-73 277.3 150 91.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.6e-72 275.4 149 89.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 8.3e-71 270.4 162 85.2
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.7e-69 265.4 149 87.2
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.0e-68 263.5 150 84.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.5e-67 259.6 147 85.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.6e-67 257.7 147 83.7
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-65 252.7 150 82.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 6.8e-65 250.8 150 82.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.8e-65 250.8 150 82.7
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.2e-64 250.0 150 81.3
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 8.3e-63 243.8 157 79.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 8.3e-63 243.8 147 77.6
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.4e-62 242.3 150 78.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.4e-62 242.3 150 76.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 5.4e-62 241.1 147 77.6
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 5.4e-62 241.1 147 77.6
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 5.4e-62 241.1 147 77.6
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-61 240.0 150 78.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-61 239.6 160 76.2
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 76.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 3.0e-60 235.3 161 75.8
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.0e-60 235.3 150 74.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.9e-60 235.0 147 77.6
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.1e-59 233.4 150 73.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.2e-58 229.9 150 71.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 2.1e-58 229.2 146 74.0
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.1e-58 229.2 146 74.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 72.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 73.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 4.7e-58 228.0 150 72.7
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 73.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 70.7
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 70.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 70.7
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 70.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 70.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.4e-55 217.2 149 68.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.1e-54 216.9 135 77.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.4e-54 216.5 147 69.4
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.4e-54 216.5 150 67.3
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 67.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 66.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 66.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 66.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 66.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 65.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 65.3
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 64.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 66.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 64.0
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 66.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 64.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 3.9e-52 208.4 147 67.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 5.1e-52 208.0 181 59.1
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 5.1e-52 208.0 148 66.2
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 6.6e-52 207.6 150 66.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 6.6e-52 207.6 150 67.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 64.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 146 63.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 64.6
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 63.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 66.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 66.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 62.0
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 66.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 4.3e-51 204.9 147 66.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 4.3e-51 204.9 147 65.3
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 4.3e-51 204.9 149 65.1
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 64.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 64.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.8e-50 202.2 143 65.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 3.6e-50 201.8 151 62.9
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 63.3
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 65.0
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 65.0
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 65.0
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 65.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 6.2e-50 201.1 147 63.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-49 200.3 145 64.1
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-49 200.3 145 64.1
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 68.5
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.4e-49 199.1 149 62.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-49 199.1 149 71.8
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 5.2e-49 198.0 149 60.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 5.2e-49 198.0 142 64.1
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 6.9e-49 197.6 150 63.3
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.5e-48 196.4 147 61.9
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.0e-48 196.1 147 62.6
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 60.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 2.0e-48 196.1 147 60.5
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.0e-48 196.1 149 61.7
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.6e-48 195.7 144 63.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 7.6e-48 194.1 149 59.7
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 7.6e-48 194.1 147 63.3
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 7.6e-48 194.1 150 62.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 9.9e-48 193.7 147 61.2
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 9.9e-48 193.7 147 61.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 9.9e-48 193.7 152 60.5
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.3e-47 193.4 147 61.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.3e-47 193.4 147 60.5
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.7e-47 193.0 144 62.5
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.2e-47 192.6 144 62.5
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.8e-47 191.8 147 62.6
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 59.3
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.8e-47 191.8 139 62.6
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 8.4e-47 190.7 150 61.3
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-46 190.3 170 57.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.2e-46 188.7 150 60.0
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 9.3e-46 187.2 144 60.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 9.3e-46 187.2 147 59.2
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.1e-45 186.0 144 60.4
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 4.6e-45 184.9 137 63.5
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.6e-45 184.9 161 55.3
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 4.6e-45 184.9 148 58.1
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 7.8e-45 184.1 147 57.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.8e-45 184.1 149 59.1
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.3e-44 182.6 139 61.2
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.9e-44 181.8 150 56.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.9e-44 181.8 150 56.0
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.9e-44 181.8 222 45.0
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 8.7e-44 180.6 142 59.9
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.9e-43 179.5 143 58.7
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 4.3e-43 178.3 148 60.8
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-43 177.9 151 64.2
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 5.6e-43 177.9 143 57.3
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 5.6e-43 177.9 143 57.3
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 5.6e-43 177.9 143 57.3
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 9.6e-43 177.2 151 66.2
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.5e-40 169.9 143 55.2
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.7e-39 166.4 193 45.1
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.6e-37 159.8 142 58.5
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.8e-34 149.1 147 49.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-33 147.1 108 61.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-33 147.1 108 61.1
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 5.3e-33 144.8 129 56.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 5.3e-33 144.8 129 56.6
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.9e-33 144.4 105 61.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.0e-32 142.9 89 75.3
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.7e-31 139.8 89 73.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.9e-31 139.0 89 76.4
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 4.9e-31 138.3 147 48.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.4e-30 136.7 103 66.0
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.4e-30 136.0 89 73.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 3.5e-29 132.1 133 49.6
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.9e-28 128.6 145 45.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.8e-26 122.5 103 59.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.4e-25 120.2 82 64.6
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 9.0e-25 117.5 144 42.4
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-24 117.1 91 59.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 8.4e-23 110.9 86 55.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.4e-22 110.2 140 40.7
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-21 107.1 147 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.0e-20 104.0 138 36.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 8.2e-18 94.4 52 84.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.6e-16 89.4 144 37.5
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.5e-16 88.6 136 27.9
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 8.5e-15 84.3 72 54.2
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-14 82.8 39 92.3
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.3e-14 80.9 140 27.1
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.4e-12 77.0 101 36.6
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-12 76.6 85 45.9
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.5e-11 73.6 103 30.1
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 8.2e-10 67.8 129 26.4
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.1e-09 67.4 127 26.8
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.0e-08 63.2 81 42.0
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 3.4e-08 62.4 49 67.3
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 7.7e-08 61.2 49 65.3
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.7e-08 61.2 46 63.0
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 1.0e-07 60.8 49 65.3
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.0e-07 60.8 133 27.1
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 8.5e-07 57.8 80 42.5


User provided reference genes

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