Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.9e-265 918.7 488 100.0
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 9.5e-225 783.5 490 88.6
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.1e-215 753.4 488 86.7
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 6.4e-213 744.2 484 84.3
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 7.6e-198 694.1 490 80.2
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 5.7e-177 624.8 497 75.9
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 2.7e-171 605.9 492 72.6
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 3.9e-162 575.5 494 70.9
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 9.7e-161 570.9 494 70.0
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 1.8e-151 540.0 442 72.2
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 5.5e-148 528.5 490 65.5
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 5.5e-148 528.5 490 65.5
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 5.2e-146 521.9 490 64.9
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 5.2e-146 521.9 490 64.9
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 2.8e-144 516.2 491 64.8
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 1.1e-143 514.2 499 64.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.2e-139 500.7 474 66.7
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 1.3e-136 490.7 484 62.2
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 1.2e-131 474.2 492 60.2
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 8.0e-131 471.5 489 58.9
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 4.6e-118 429.1 504 57.7
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 3.6e-115 419.5 512 57.0
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 3.1e-114 416.4 503 57.5
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 3.1e-114 416.4 499 56.3
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 5.8e-113 412.1 498 56.8
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 5.8e-113 412.1 496 55.4
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 3.2e-111 406.4 507 55.4
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 6.2e-107 392.1 496 54.2
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.6e-102 377.5 500 53.0
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 6.0e-102 375.6 502 52.4
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 1.3e-101 374.4 500 52.8
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 1.2e-99 367.9 502 52.8
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 1.6e-94 350.9 495 49.9
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 4.2e-39 166.8 534 31.6
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 2.0e-25 121.3 529 30.4
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 1.0e-24 119.0 497 28.6
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 3.2e-23 114.0 431 29.7
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 6.1e-22 109.8 557 28.2
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 3.1e-18 97.4 223 32.3
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 4.1e-18 97.1 466 27.3
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 1.6e-17 95.1 235 31.5
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.9e-17 93.2 235 30.6
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 5.9e-17 93.2 472 28.0
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 2.3e-16 91.3 208 34.6
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 1.9e-15 88.2 463 27.0
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 4.2e-15 87.0 501 27.3
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 2.1e-14 84.7 504 28.2
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 2.8e-14 84.3 458 29.0
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 1.0e-13 82.4 208 34.6
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 5.7e-12 76.6 455 29.5
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 1.1e-10 72.4 96 46.9
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 4.1e-10 70.5 571 26.3
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 2.0e-09 68.2 281 31.0
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 1.1e-07 62.4 238 27.7
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.1e-07 62.4 447 25.3
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 7.3e-07 59.7 279 28.7
Atru.chr3.1540 Acer truncatum HOM05D022167 ORTHO05D009787 1.6e-06 58.5 150 36.7
MBI08_g22655_MAGBIO Magnolia biondii HOM05D008213 ORTHO05D009787 8.0e-06 56.2 245 26.9


User provided reference genes

Program Settings