Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 0.0e+00 1152.1 560 100.0
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 0.0e+00 1135.6 560 98.6
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 0.0e+00 1115.1 560 96.4
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 0.0e+00 1089.7 560 93.0
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 0.0e+00 1080.1 560 93.4
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 3.2e-309 1064.3 561 91.4
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 1.0e-286 989.6 520 91.9
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.5e-285 984.9 560 82.9
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.4e-283 979.2 520 89.6
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.8e-281 971.5 563 81.9
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 9.8e-250 866.7 563 73.0
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 8.3e-249 863.6 557 73.4
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 5.9e-247 857.4 557 73.1
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.7e-246 855.9 557 72.9
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.0e-246 855.1 557 72.7
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 4.0e-243 844.7 558 71.1
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 8.9e-243 843.6 564 71.5
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 1.2e-242 843.2 567 70.9
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 1.2e-242 843.2 564 71.1
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 2.6e-242 842.0 564 71.5
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 1.1e-240 836.6 567 69.8
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 5.4e-240 834.3 562 69.6
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 5.0e-238 827.8 565 68.5
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 2.5e-237 825.5 565 69.2
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 5.6e-237 824.3 561 68.8
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.2e-236 823.2 561 69.0
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 2.1e-236 822.4 558 69.2
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 6.2e-236 820.8 569 68.7
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 6.8e-235 817.4 582 67.2
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 7.5e-234 813.9 565 68.0
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 3.7e-233 811.6 560 68.4
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 6.4e-233 810.8 565 68.0
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 9.2e-232 807.0 565 67.8
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 8.6e-230 800.4 523 72.8
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 8.6e-230 800.4 563 66.3
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.5e-229 799.7 599 64.8
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 5.6e-229 797.7 612 63.2
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 2.1e-228 795.8 539 69.0
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.1e-228 795.8 559 67.1
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 6.8e-227 790.8 565 67.8
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 2.9e-225 785.4 561 66.1
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 2.7e-223 778.9 570 64.7
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 1.7e-222 776.2 567 65.1
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 2.3e-222 775.8 565 64.4
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.3e-222 775.8 559 65.8
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 1.5e-218 763.1 560 65.7
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 1.3e-217 760.0 570 63.5
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 3.8e-217 758.4 560 64.1
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 3.2e-216 755.4 562 64.2
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 3.5e-215 751.9 557 63.9
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.9e-214 748.4 567 65.1
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 1.5e-213 746.5 562 63.3
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 2.5e-213 745.7 525 68.4
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 4.8e-212 741.5 561 64.2
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 2.4e-211 739.2 553 63.3
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 5.8e-210 734.6 562 61.2
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 6.4e-209 731.1 553 62.7
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.1e-208 730.3 559 62.6
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 1.4e-208 729.9 570 64.4
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 3.2e-208 728.8 563 62.7
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 7.1e-208 727.6 559 62.6
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.5e-205 719.9 558 62.9
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 4.3e-205 718.4 559 63.0
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 1.6e-204 716.5 520 65.4
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 3.4e-202 708.8 560 62.1
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 2.2e-201 706.1 503 64.8
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 1.6e-199 699.9 558 60.8
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 2.1e-199 699.5 526 65.0
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 7.9e-199 697.6 563 58.8
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 3.0e-198 695.7 563 58.8
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.6e-196 689.9 590 59.8
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.4e-195 686.8 526 64.3
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 2.5e-192 676.0 558 57.9
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 3.5e-191 672.2 526 61.6
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 6.3e-188 661.4 457 69.1
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 8.2e-188 661.0 457 68.7
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 6.9e-187 657.9 536 59.7
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 2.0e-186 656.4 451 69.4
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 1.1e-179 634.0 492 63.2
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 7.7e-178 627.9 683 49.9
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 3.9e-174 615.5 477 62.7
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 6.9e-171 604.7 567 53.4
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 1.7e-169 600.1 569 52.4
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.6e-162 577.0 526 55.3
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.6e-162 577.0 526 55.1
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 1.3e-161 573.9 311 89.4
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 3.2e-160 569.3 587 52.1
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 1.0e-158 564.3 585 48.5
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.9e-153 546.2 530 50.2
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 4.2e-152 542.3 479 56.6
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 8.6e-145 518.1 398 61.8
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 7.2e-144 515.0 257 96.5
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 9.8e-125 451.4 295 75.6
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 2.1e-119 433.7 298 65.4
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 6.6e-113 412.1 319 63.3
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 5.6e-112 409.1 321 64.2
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 2.8e-111 406.8 340 57.6
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 4.9e-108 396.0 276 63.0
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 3.2e-107 393.3 401 51.1
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 1.2e-106 391.3 594 36.7
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 1.7e-100 370.9 584 34.2
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 8.7e-89 332.0 248 63.7
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.1e-88 331.6 262 62.6
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 1.1e-88 331.6 267 60.7
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 2.2e-84 317.4 199 75.4
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 8.2e-79 298.9 246 56.5
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 2.5e-75 287.3 202 64.9
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 9.4e-67 258.8 140 81.4
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 3.8e-60 236.9 185 58.4
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 1.1e-59 235.3 168 76.2
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 2.6e-56 224.2 208 54.8
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.5e-53 214.9 304 37.8
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 7.7e-53 212.6 152 67.1
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 1.8e-46 191.4 185 51.9
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 5.3e-46 189.9 170 58.8
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 3.6e-42 177.2 148 68.2
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.7e-39 168.3 151 57.0
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 7.0e-30 136.3 81 79.0
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 2.3e-28 131.3 86 72.1
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 3.3e-27 127.5 104 55.8
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 3.1e-22 110.9 112 46.4
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 5.2e-17 93.6 71 66.2
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 7.5e-16 89.7 43 97.7
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 1.1e-14 85.9 50 74.0
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.8e-09 68.6 62 54.8


User provided reference genes

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