Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.6e-180 636.0 324 100.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 5.3e-171 604.4 324 95.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.2e-160 568.2 324 88.6
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.2e-151 540.0 318 86.5
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.8e-148 528.9 312 84.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.2e-148 527.3 318 85.8
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-147 526.9 312 84.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-146 522.7 311 83.9
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.6e-146 522.3 318 83.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.1e-144 516.9 330 79.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-141 506.5 312 83.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.1e-135 486.1 311 78.8
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 3.4e-130 468.8 318 76.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.2e-121 439.5 321 69.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.4e-117 424.5 296 70.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.4e-117 424.5 296 70.9
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.7e-117 424.1 296 70.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-115 420.2 293 71.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.4e-115 420.2 282 72.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.8e-115 419.9 281 71.9
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.6e-114 416.8 245 78.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.6e-114 416.8 258 75.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.0e-114 416.4 242 78.5
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.6e-114 416.0 258 75.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.5e-114 415.2 246 77.2
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 5.9e-114 414.8 246 76.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.7e-113 413.3 242 78.5
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.2e-113 412.9 246 77.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 2.9e-113 412.5 291 69.1
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.9e-113 412.5 242 78.5
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.9e-113 412.5 273 72.2
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.8e-113 412.1 245 77.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.8e-113 412.1 246 77.6
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 6.5e-113 411.4 240 79.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 8.5e-113 411.0 241 78.4
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.9e-112 409.8 244 77.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 2.5e-112 409.5 292 66.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 2.5e-112 409.5 258 74.0
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.2e-112 409.1 282 70.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.2e-112 408.7 243 77.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 5.5e-112 408.3 282 70.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 7.2e-112 407.9 292 67.1
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.2e-112 407.9 282 70.9
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.2e-111 407.1 242 77.3
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.2e-111 407.1 286 68.9
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.6e-111 406.8 316 64.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.1e-111 406.4 316 66.5
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 3.6e-111 405.6 261 71.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.7e-111 405.2 320 63.8
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 4.7e-111 405.2 274 69.7
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 8.0e-111 404.4 322 63.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 8.0e-111 404.4 255 74.9
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 8.0e-111 404.4 304 64.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.0e-110 404.1 332 61.1
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.4e-110 403.7 242 76.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.4e-110 403.7 245 75.5
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.8e-110 403.3 252 74.2
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.8e-110 403.3 253 73.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 2.3e-110 402.9 255 72.2
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.0e-110 402.5 290 66.6
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 3.0e-110 402.5 273 70.0
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 4.0e-110 402.1 317 63.4
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.0e-110 402.1 288 67.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.0e-109 399.8 321 64.8
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.4e-109 399.1 260 72.7
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 9.7e-109 397.5 305 64.9
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.7e-109 397.5 246 74.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.7e-108 396.7 242 74.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.7e-108 396.7 289 67.5
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.8e-108 396.0 274 67.9
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 4.8e-108 395.2 287 67.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 4.8e-108 395.2 259 69.9
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.3e-108 394.4 217 85.7
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-107 394.0 258 69.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.4e-107 393.7 281 68.0
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.1e-107 392.5 261 71.6
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.0e-107 391.3 321 60.4
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 9.1e-107 391.0 269 66.9
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.2e-106 390.6 245 73.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-106 389.8 245 72.2
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 4.5e-106 388.7 242 74.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 5.9e-106 388.3 279 66.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.7e-105 386.7 245 73.1
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 8.5e-105 384.4 310 61.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 5.5e-104 381.7 310 60.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 7.2e-104 381.3 288 64.6
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 9.4e-104 380.9 288 64.2
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 6.1e-103 378.3 291 64.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.8e-102 374.8 251 70.5
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 9.8e-101 370.9 253 66.8
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.3e-100 370.5 278 62.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.2e-100 369.8 265 67.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.8e-100 369.4 242 69.0
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.7e-97 360.1 268 65.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-97 360.1 214 76.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.8e-97 359.0 399 49.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 5.0e-97 358.6 256 66.4
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 6.6e-97 358.2 238 71.8
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.1e-95 351.7 241 70.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-94 350.9 264 65.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.0e-94 350.9 339 56.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.3e-92 341.3 249 68.3
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 5.6e-88 328.6 309 52.8
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.6e-87 327.0 452 43.6
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.8e-87 326.2 248 62.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.3e-86 323.2 215 70.7
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 5.2e-86 322.0 319 55.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.2e-84 316.6 266 60.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.7e-84 315.8 267 55.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.3e-80 302.8 233 64.8
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.8e-79 299.7 270 60.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-74 284.3 224 67.0
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.3e-73 280.0 250 52.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.5e-72 277.3 167 75.4
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 8.1e-71 271.6 213 57.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.2e-68 263.5 177 71.8
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.7e-66 256.5 253 52.6
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.7e-66 256.5 165 72.7
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.0e-65 254.6 257 47.9
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.6e-63 247.3 159 71.7
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.9e-60 236.5 301 40.2
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 8.4e-60 235.0 119 96.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 4.2e-59 232.6 141 74.5
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.6e-55 219.5 139 74.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.4e-54 217.6 206 56.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.4e-54 217.6 255 49.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 6.9e-54 215.3 191 57.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 9.9e-53 211.5 137 70.8
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 6.4e-52 208.8 246 44.3
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 4.2e-51 206.1 131 73.3
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.3e-49 201.1 136 74.3
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.3e-49 201.1 136 74.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.6e-47 194.1 167 56.3
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.8e-47 192.6 205 54.6
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.2e-45 188.0 126 69.8
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.4e-45 186.4 112 73.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 4.5e-45 186.0 164 61.6
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.4e-43 181.0 110 76.4
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.2e-43 179.9 99 79.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.6e-42 176.0 141 63.1
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 7.9e-42 175.3 239 38.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.3e-38 162.5 92 79.3
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 3.4e-37 159.8 247 38.1
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.4e-37 159.8 251 35.9
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 7.9e-34 148.7 160 52.5
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.5e-32 143.7 82 75.6
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 3.1e-30 136.7 76 78.9
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 9.0e-30 135.2 77 75.3
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 2.9e-28 130.2 123 55.3
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 5.5e-27 125.9 76 71.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.0e-25 121.7 94 66.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 8.7e-25 118.6 66 75.8
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.2e-21 108.2 245 30.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.5e-21 107.8 61 77.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.8e-20 103.2 71 71.8
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.0e-20 102.8 56 75.0
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 7.2e-19 99.0 109 50.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 3.3e-16 90.1 50 80.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-14 85.1 47 76.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 5.3e-14 82.8 86 55.8
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.0e-13 80.9 60 51.7
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 8.5e-12 75.5 133 33.8
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.9e-11 74.3 89 58.4
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 5.5e-11 72.8 45 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.4e-09 68.2 100 37.0
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 3.1e-06 57.0 76 39.5


User provided reference genes

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