Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.7e-272 942.2 505 100.0
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 5.2e-266 920.6 505 97.4
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.9e-260 902.1 505 95.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 7.2e-260 900.2 505 95.4
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.0e-250 868.2 505 92.1
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.6e-249 865.1 505 91.7
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 3.6e-243 844.7 508 89.6
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 3.7e-240 834.7 507 88.6
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 3.3e-236 821.6 505 87.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.8e-235 818.5 505 87.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.6e-233 812.0 507 86.4
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-231 806.6 497 87.1
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.7e-229 799.3 514 85.0
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.1e-205 718.0 510 78.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 6.4e-192 674.5 508 73.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.2e-190 670.2 507 73.2
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 7.9e-190 667.5 510 72.5
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 7.4e-188 661.0 509 72.5
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.8e-186 656.4 498 71.9
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 4.0e-186 655.2 507 71.8
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.9e-186 654.4 476 75.0
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.8e-185 651.4 509 71.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-184 650.6 509 71.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.9e-184 649.0 476 74.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 7.1e-183 644.4 510 69.8
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.6e-182 643.3 508 71.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.1e-182 642.9 476 73.7
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.3e-181 639.4 510 69.0
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.9e-181 638.6 508 69.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.1e-181 638.3 495 70.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.1e-181 638.3 510 71.4
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 6.7e-181 637.9 491 70.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.1e-180 637.1 504 70.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.5e-180 636.7 500 71.0
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.5e-180 636.7 501 71.1
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.7e-179 632.1 503 70.0
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.8e-179 631.7 503 70.0
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 4.8e-179 631.7 510 69.4
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 6.3e-179 631.3 504 71.0
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 8.2e-179 630.9 510 69.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.4e-178 629.4 506 71.9
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 3.1e-178 629.0 509 69.2
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.1e-178 629.0 472 73.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 4.1e-178 628.6 472 73.3
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 5.3e-178 628.2 505 68.7
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 6.9e-178 627.9 490 70.8
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.5e-177 626.7 498 70.3
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 4.5e-177 625.2 508 69.7
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 7.6e-177 624.4 508 68.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 7.6e-177 624.4 500 69.4
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.2e-176 622.9 500 69.4
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 2.9e-176 622.5 505 69.1
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.8e-176 622.1 488 69.1
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.1e-175 620.5 507 67.7
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.9e-175 619.8 500 69.0
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.5e-174 615.5 501 70.3
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.0e-173 614.0 509 66.8
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.3e-173 613.6 494 69.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-173 612.1 508 66.9
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.5e-172 609.4 493 69.0
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.3e-172 609.0 506 68.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-171 607.1 518 65.6
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.3e-171 607.1 483 69.8
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 3.7e-171 605.5 494 69.2
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.1e-170 602.4 531 65.3
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 5.3e-170 601.7 509 67.6
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.2e-169 600.5 488 69.7
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.0e-169 599.7 488 69.3
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-169 599.4 497 66.8
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.7e-168 596.7 508 67.9
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.5e-167 592.8 505 66.1
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.2e-167 592.4 489 67.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 7.2e-167 591.3 506 67.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.6e-166 588.6 500 66.2
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.8e-165 586.6 505 65.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 5.1e-165 585.1 506 65.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 8.8e-165 584.3 512 65.0
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.0e-164 583.2 511 65.9
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.0e-164 583.2 500 65.8
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.0e-164 583.2 508 65.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.5e-164 582.8 519 64.0
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 2.5e-164 582.8 476 68.3
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 4.3e-164 582.0 490 66.5
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.7e-163 578.9 505 64.4
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.4e-162 577.0 508 66.3
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.4e-161 572.4 499 70.7
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.0e-160 568.5 509 65.4
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.2e-159 565.5 421 73.6
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.5e-159 565.1 493 63.7
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 3.9e-157 558.9 493 63.5
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.6e-156 556.2 489 64.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.6e-156 556.2 473 65.5
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.3e-156 555.8 488 66.2
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 4.4e-156 555.4 488 63.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.7e-156 555.1 493 63.5
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.7e-156 555.1 490 64.9
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 9.7e-156 554.3 512 62.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 2.4e-154 549.7 513 62.0
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.6e-153 547.0 512 62.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.0e-153 546.6 512 62.3
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.5e-151 539.7 448 68.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.5e-151 538.5 510 62.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 8.0e-150 534.6 381 75.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.0e-149 532.3 508 61.2
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.8e-146 523.5 391 79.0
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.8e-146 523.5 391 79.0
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.3e-146 521.9 358 76.5
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.8e-141 506.9 448 65.4
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.9e-136 489.6 486 57.6
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.1e-135 487.6 537 56.2
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 8.0e-134 481.5 492 58.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 5.9e-129 465.3 475 57.1
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.4e-122 444.1 503 53.1
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 5.9e-121 438.7 475 57.7
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.5e-119 433.3 394 65.5
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.2e-117 425.6 447 58.4
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.5e-116 424.1 386 59.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.1e-110 403.7 399 58.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.5e-103 380.2 381 61.2
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.2e-92 344.7 207 82.6
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.1e-88 329.3 221 81.0
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 4.5e-84 316.2 324 53.4
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 4.9e-83 312.8 417 47.0
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 3.2e-82 310.1 427 47.3
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.0e-80 305.1 253 68.4
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.8e-80 304.3 434 44.2
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-77 295.0 220 71.4
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.2e-75 287.3 286 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.9e-74 284.3 390 45.9
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.6e-57 226.9 202 65.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 8.7e-56 222.2 272 50.0
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-55 221.5 357 41.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.1e-50 205.3 382 36.6
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.0e-48 197.2 327 39.1
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.3e-47 193.7 145 75.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-44 184.9 231 50.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-39 168.7 97 84.5
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 4.1e-37 160.2 93 84.9
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.1e-33 146.4 107 62.6
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 7.5e-31 139.4 88 78.4
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 7.0e-29 132.9 138 60.1
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.6e-23 114.4 122 55.7
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-21 108.2 70 90.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 5.4e-21 106.7 185 40.0
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-12 78.2 58 70.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-12 78.2 58 70.7
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.9e-10 71.6 58 65.5
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 3.6e-09 67.4 59 66.1
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.2e-07 62.4 50 70.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.4e-07 60.5 93 37.6
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.7e-07 60.1 44 68.2
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 1.3e-06 58.9 92 33.7
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.2e-06 58.2 72 48.6


User provided reference genes

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