Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.9e-55 217.6 114 100.0
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 4.9e-55 217.6 114 100.0
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.6e-50 202.6 114 93.9
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 4.7e-50 201.1 112 93.8
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.0e-49 199.9 114 92.1
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 2.3e-49 198.7 114 91.2
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 5.8e-48 194.1 115 91.3
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.1e-46 188.0 114 86.8
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 9.2e-46 186.8 114 88.6
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 1.6e-45 186.0 112 89.3
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.7e-45 185.3 114 85.1
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 86.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 86.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 86.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 86.0
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 86.0
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 80.7
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 80.7
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 86.0
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 81.6
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 80.7
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 79.8
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.1e-42 175.6 111 81.1
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 80.7
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 78.1
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.6e-42 174.9 114 79.8
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 79.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 77.2
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.1e-41 173.3 114 78.1
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 78.9
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 76.3
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 5.2e-41 171.0 112 78.6
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 5.2e-41 171.0 115 80.0
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 77.2
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 76.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 6.8e-41 170.6 113 77.9
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 76.3
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 77.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 75.4
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 78.9
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.5e-40 169.5 110 79.1
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.0e-40 169.1 115 79.1
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 77.2
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 75.4
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 114 75.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 77.2
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 4.4e-40 167.9 106 81.1
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 77.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 76.8
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 76.3
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 76.3
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 9.8e-40 166.8 113 76.1
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 77.7
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 75.4
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 110 77.3
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.7e-39 166.0 115 76.5
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.7e-39 166.0 115 76.5
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 115 76.5
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.7e-39 166.0 115 76.5
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.7e-39 166.0 112 75.0
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 75.4
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 78.1
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 74.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 74.6
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 3.7e-39 164.9 110 77.3
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 74.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 74.6
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 74.6
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 8.3e-39 163.7 110 76.4
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 8.3e-39 163.7 114 73.7
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 8.3e-39 163.7 115 75.7
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 73.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.4e-38 162.9 113 75.2
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.4e-38 162.9 114 75.4
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-38 162.5 115 75.7
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.9e-38 162.5 112 73.2
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 73.7
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 3.2e-38 161.8 107 76.6
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.2e-38 161.8 112 75.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 7.1e-38 160.6 102 82.4
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 7.1e-38 160.6 100 87.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 7.1e-38 160.6 115 73.9
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 73.7
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 9.2e-38 160.2 112 72.3
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 9.2e-38 160.2 112 72.3
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.2e-37 159.8 98 84.7
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.6e-37 159.5 110 74.5
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.6e-37 159.5 115 73.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 2.7e-37 158.7 115 72.2
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.7e-37 158.7 115 73.9
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.7e-37 158.7 114 69.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 4.6e-37 157.9 114 69.3
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.0e-36 156.8 114 71.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.0e-36 155.2 114 72.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.0e-36 155.2 114 72.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 3.0e-36 155.2 105 73.3
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 3.0e-36 155.2 105 74.3
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 3.9e-36 154.8 114 73.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.9e-36 154.8 105 77.1
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.1e-35 153.3 142 61.3
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.5e-35 152.9 114 69.3
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 2.5e-35 152.1 114 71.9
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 7.3e-35 150.6 145 58.6
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-34 149.8 146 60.3
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.6e-34 149.4 115 74.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 2.8e-34 148.7 114 68.4
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.1e-33 146.7 112 67.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 9.9e-32 140.2 114 64.0
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.7e-31 139.4 80 88.8
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 4.9e-31 137.9 84 83.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 8.4e-31 137.1 94 74.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.1e-30 136.7 114 65.8
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 9.2e-30 133.7 79 84.8
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.2e-29 133.3 77 89.6
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 2.1e-29 132.5 80 83.8
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.7e-28 129.4 101 66.3
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.9e-28 128.3 114 61.4
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-27 126.7 77 87.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-27 126.3 104 65.4
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 4.3e-27 124.8 83 77.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 4.3e-27 124.8 83 77.1
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-26 122.5 77 84.4
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.4e-25 119.8 77 80.5
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.4e-24 115.2 71 81.7
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.8e-24 114.4 65 87.7
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 3.8e-23 111.7 77 70.1
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.7e-21 105.5 100 57.0
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 6.0e-21 104.4 69 73.9
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 6.0e-21 104.4 105 58.1
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.3e-20 103.2 102 54.9
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 1.5e-19 99.8 102 54.9
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 9.6e-19 97.1 114 49.1
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.2e-16 90.1 98 54.1
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.0e-16 89.4 63 69.8
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.4e-16 88.6 109 44.0
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 4.5e-16 88.2 60 78.3
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 7.6e-16 87.4 105 51.4
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 1.3e-15 86.7 99 58.6
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 2.9e-15 85.5 65 64.6
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.1e-14 83.6 79 51.9
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.4e-14 83.2 84 53.6
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 5.4e-14 81.3 97 56.7
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.2e-13 80.1 99 48.5
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.5e-13 78.6 51 80.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.3e-12 76.6 57 70.2
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-12 76.3 50 80.0
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.0e-12 75.5 45 84.4
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.0e-12 75.5 106 42.5
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 3.0e-12 75.5 93 52.7
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-11 73.2 43 81.4
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 1.9e-11 72.8 43 83.7
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 2.5e-11 72.4 51 74.5
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.3e-10 70.1 43 76.7
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.8e-10 68.9 62 54.8
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.6e-10 68.6 93 49.5
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 4.8e-10 68.2 92 45.7
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 5.3e-09 64.7 55 61.8
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.2e-07 59.3 59 49.2
BolC3t14384H Brassica oleracea HOM05D004600 ORTHO05D005471 7.1e-06 54.3 78 51.3


User provided reference genes

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