Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.4e-210 736.1 386 100.0
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 4.5e-145 518.5 392 76.0
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 8.3e-123 444.5 390 67.7
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 7.8e-121 438.0 391 65.5
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.6e-118 430.3 386 65.3
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.5e-116 423.7 385 63.6
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 3.2e-114 416.0 385 62.1
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 7.0e-114 414.8 397 62.5
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 9.5e-111 404.4 386 63.7
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 9.5e-111 404.4 394 62.2
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-94 350.9 339 63.1
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.3e-88 330.1 170 91.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 3.4e-84 316.2 169 89.3
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 2.1e-81 307.0 170 86.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 1.9e-79 300.4 171 86.0
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 7.3e-79 298.5 171 84.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.1e-77 294.7 170 82.4
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-76 291.2 171 83.6
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 7.9e-73 278.5 176 71.6
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 2.3e-72 276.9 169 79.3
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 8.7e-72 275.0 173 73.4
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.1e-71 274.6 173 72.8
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.5e-71 273.5 172 72.1
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 9.6e-71 271.6 173 71.7
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 3.7e-70 269.6 173 71.1
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.8e-69 267.3 171 73.1
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 6.9e-69 265.4 173 71.1
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 6.9e-69 265.4 173 71.7
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.2e-68 264.6 173 70.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.6e-68 263.5 170 72.9
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 2.6e-68 263.5 169 69.8
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 7.6e-68 261.9 170 71.8
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 9.9e-68 261.5 174 68.4
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.2e-67 260.4 173 69.9
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 2.2e-67 260.4 173 69.9
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 2.2e-67 260.4 174 69.0
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 2.9e-67 260.0 169 71.0
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 3.8e-67 259.6 175 68.0
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 1.1e-66 258.1 169 69.8
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.1e-66 258.1 173 69.4
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.4e-66 256.9 169 70.4
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 2.4e-66 256.9 169 69.8
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 3.2e-66 256.5 173 68.2
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 4.2e-66 256.1 176 67.6
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 4.2e-66 256.1 174 67.8
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 5.5e-66 255.8 173 68.8
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 9.3e-66 255.0 174 68.4
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 9.3e-66 255.0 173 67.1
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 9.3e-66 255.0 172 70.3
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.2e-65 254.6 173 68.8
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.6e-65 254.2 174 68.4
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 2.1e-65 253.8 173 67.6
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.7e-65 253.4 169 69.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.6e-65 252.7 173 68.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 4.6e-65 252.7 174 66.1
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 4.6e-65 252.7 173 67.6
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.0e-65 252.3 173 68.2
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 6.0e-65 252.3 175 65.7
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.3e-64 251.1 173 67.1
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.8e-64 250.8 174 66.1
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 3.0e-64 250.0 172 66.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.0e-64 250.0 171 66.7
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 3.0e-64 250.0 171 68.4
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 3.9e-64 249.6 172 66.3
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 5.1e-64 249.2 177 66.7
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 6.7e-64 248.8 175 64.0
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 6.7e-64 248.8 176 67.0
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 8.7e-64 248.4 174 66.7
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.1e-63 248.1 177 64.4
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.9e-63 247.3 174 64.4
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.9e-63 247.3 172 65.7
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 4.3e-63 246.1 178 65.7
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 4.3e-63 246.1 173 64.2
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 5.6e-63 245.7 174 66.7
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 5.6e-63 245.7 171 67.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 7.4e-63 245.4 173 65.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 9.6e-63 245.0 170 65.9
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 9.6e-63 245.0 172 65.1
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 1.6e-62 244.2 172 65.1
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.8e-62 243.4 171 67.3
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 3.7e-62 243.0 173 65.9
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.8e-61 240.7 172 65.1
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.4e-61 240.4 174 63.8
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 3.1e-61 240.0 174 64.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 9.0e-61 238.4 174 64.4
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.2e-60 238.0 171 61.4
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.0e-59 235.0 172 61.0
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.3e-59 234.6 175 62.3
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.2e-59 233.8 175 61.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 3.8e-59 233.0 170 64.1
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.9e-58 230.7 143 74.1
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.5e-58 229.2 175 62.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.2e-57 228.0 172 61.6
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 3.5e-57 226.5 176 59.7
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 3.5e-57 226.5 176 59.7
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.0e-56 224.9 134 82.8
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 2.5e-55 220.3 163 64.4
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 5.7e-55 219.2 151 65.6
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.7e-55 218.4 151 66.9
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-54 217.6 163 62.0
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 4.8e-54 216.1 176 58.0
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 5.3e-53 212.6 177 56.5
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 3.4e-52 209.9 152 65.1
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 7.7e-52 208.8 149 61.7
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.9e-50 204.1 149 64.4
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 8.8e-48 195.3 179 53.6
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 5.9e-44 182.6 132 78.8
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 1.4e-42 177.9 170 48.2
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 1.2e-41 174.9 182 46.2
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.3e-40 170.6 171 47.4
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 8.8e-40 168.7 136 62.5
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 3.7e-38 163.3 138 69.6
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 4.8e-38 162.9 144 69.4
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 7.7e-36 155.6 137 68.6
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 1.0e-35 155.2 132 74.2
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.3e-35 154.8 171 45.0
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 8.5e-35 152.1 133 64.7
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 1.1e-34 151.8 130 66.2
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 4.2e-34 149.8 132 69.7
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 4.2e-34 149.8 132 68.9
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 1.6e-33 147.9 130 64.6
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 2.3e-32 144.1 130 60.8
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.3e-32 144.1 131 64.1
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 3.9e-32 143.3 167 45.5
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 5.2e-32 142.9 131 63.4
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 9.7e-31 138.7 131 59.5
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.3e-30 138.3 127 63.0
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.3e-30 138.3 127 63.0
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 6.3e-30 136.0 129 63.6
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 4.1e-29 133.3 129 61.2
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 7.0e-29 132.5 117 64.1
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 2.0e-28 131.0 129 59.7
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 4.5e-28 129.8 127 53.5
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 1.3e-27 128.3 129 58.9
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 1.3e-27 128.3 129 58.9
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 6.5e-27 125.9 130 57.7
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 1.4e-21 108.2 175 37.1
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 3.5e-20 103.6 64 76.6
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.0e-19 102.1 56 76.8
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 2.2e-19 100.9 150 43.3
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 4.7e-17 93.2 183 35.5
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 1.6e-12 78.2 91 46.2
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 4.7e-09 66.6 115 40.0
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 8.0e-09 65.9 82 46.3
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.5e-07 61.6 114 35.1
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 9.8e-07 58.9 96 39.6
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 2.8e-06 57.4 141 31.2
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 8.3e-06 55.8 100 40.0


User provided reference genes

Program Settings