Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 3.0e-298 1028.5 862 100.0
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.9e-216 756.1 891 73.4
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.2e-158 564.7 875 64.8
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.3e-147 525.8 881 64.5
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 7.0e-146 522.3 879 63.8
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 7.0e-138 495.7 877 60.8
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 5.8e-116 422.9 884 59.4
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.2e-106 390.6 883 62.6
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.2e-102 378.6 884 60.0
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.7e-96 358.2 946 53.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 1.9e-95 354.8 883 61.5
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.2e-75 288.1 328 57.3
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 3.2e-74 284.3 320 60.3
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 9.3e-74 282.7 311 59.2
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.0e-72 279.3 319 57.4
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 7.4e-71 273.1 329 55.9
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 9.6e-71 272.7 274 62.8
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.6e-70 271.9 301 58.1
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.6e-70 271.9 302 57.9
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.8e-70 271.2 294 59.5
Carub.0004s1024 Capsella rubella HOM05D005166 ORTHO05D006120 3.7e-70 270.8 699 69.7
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 4.8e-70 270.4 236 66.5
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 6.2e-70 270.0 294 59.2
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.4e-69 268.9 167 86.2
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 5.3e-69 266.9 239 64.9
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.2e-68 265.8 321 56.7
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.2e-68 265.8 321 56.7
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.5e-68 265.4 305 57.4
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 3.4e-68 264.2 247 62.3
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 4.5e-68 263.8 325 55.1
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 5.8e-68 263.5 289 57.8
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 7.6e-68 263.1 257 62.6
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 7.6e-68 263.1 309 57.3
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 7.6e-68 263.1 326 57.1
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.0e-67 262.7 246 61.4
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.0e-67 262.7 302 56.0
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.3e-67 262.3 315 54.9
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.7e-67 261.9 330 54.5
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 2.2e-67 261.5 298 58.4
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 2.2e-67 261.5 315 53.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 4.9e-67 260.4 310 57.7
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 4.9e-67 260.4 246 60.6
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.4e-66 258.8 219 65.8
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 4.2e-66 257.3 231 64.9
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.7e-65 254.6 213 67.1
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.7e-65 254.6 275 60.0
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 7.9e-65 253.1 253 60.5
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.0e-64 252.7 284 58.1
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.0e-64 252.7 274 60.6
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.0e-64 252.7 306 55.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 5.1e-64 250.4 226 63.7
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 5.1e-64 250.4 317 53.0
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 5.1e-64 250.4 289 56.4
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 6.7e-64 250.0 236 62.3
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 8.7e-64 249.6 235 63.0
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-63 249.2 302 55.0
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.5e-63 248.8 288 56.2
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.9e-63 248.4 305 55.1
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.9e-63 248.4 176 73.9
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.5e-63 248.1 300 56.0
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 3.3e-63 247.7 262 59.9
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.3e-63 247.7 276 58.3
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 4.3e-63 247.3 289 57.1
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 7.4e-63 246.5 329 54.1
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 9.7e-63 246.1 330 53.9
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 9.7e-63 246.1 262 59.5
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 2.8e-62 244.6 241 61.8
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 2.8e-62 244.6 290 55.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 8.2e-62 243.0 265 57.7
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 8.2e-62 243.0 286 55.2
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 8.2e-62 243.0 319 52.7
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.4e-61 242.3 331 52.9
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 2.4e-61 241.5 235 61.7
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 3.1e-61 241.1 286 54.9
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 3.1e-61 241.1 316 53.5
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 4.1e-61 240.7 332 51.2
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 4.1e-61 240.7 332 51.8
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.3e-61 240.4 273 58.2
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.9e-61 240.0 231 61.5
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 9.0e-61 239.6 318 53.1
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 1.5e-60 238.8 301 54.8
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 2.0e-60 238.4 321 53.6
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.6e-60 238.0 302 54.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.6e-60 238.0 279 55.2
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 4.5e-60 237.3 296 54.1
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 1.0e-59 236.1 323 51.4
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.7e-59 235.3 321 53.0
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 2.9e-59 234.6 329 48.3
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.9e-58 231.9 210 61.9
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 3.2e-58 231.1 160 76.2
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 7.2e-58 229.9 307 52.1
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 7.2e-58 229.9 141 83.0
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.6e-57 228.8 332 53.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.1e-57 228.4 296 53.4
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.1e-57 228.4 304 54.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 6.1e-57 226.9 324 51.2
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.0e-56 226.1 234 58.5
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 3.9e-56 224.2 323 52.9
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.7e-56 223.4 134 82.8
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 3.3e-55 221.1 324 51.9
CARHR122470 Cardamine hirsuta HOM05D005166 ORTHO05D006120 4.3e-55 220.7 715 54.5
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.2e-54 218.4 263 56.7
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 6.3e-54 216.9 282 51.1
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 6.3e-54 216.9 282 51.1
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 8.2e-54 216.5 301 51.8
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 5.3e-53 213.8 249 54.2
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.0e-51 209.5 131 77.9
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.0e-51 209.5 283 50.5
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.6e-49 202.2 298 48.3
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 2.7e-49 201.4 134 75.4
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.7e-46 192.2 176 63.1
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 3.7e-46 191.0 175 61.7
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 4.8e-46 190.7 301 46.8
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 4.1e-45 187.6 226 50.9
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 5.3e-45 187.2 273 49.5
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 3.0e-40 171.4 288 48.6
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 6.7e-40 170.2 153 64.7
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 4.4e-39 167.5 164 55.5
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 2.4e-37 161.8 189 51.3
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 5.7e-31 140.6 134 61.2
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 3.7e-30 137.9 184 53.8
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 4.5e-28 131.0 139 56.1
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.0e-27 129.8 186 46.2
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.4e-21 107.5 135 46.7
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 3.8e-19 101.3 227 39.6
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 5.2e-16 90.9 80 65.0
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.2e-14 85.5 97 52.6
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.4e-13 82.0 57 71.9
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 3.1e-08 65.1 50 68.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 6.4e-06 57.4 170 28.8
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 6.4e-06 57.4 55 56.4
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 6.4e-06 57.4 55 56.4


User provided reference genes

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