Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G23260 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 6.4e-49 197.2 107 100.0
AT2G28725 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.1e-43 179.9 107 90.7
Carub.0004s0974 Capsella rubella HOM05D001886 ORTHO05D004007 5.8e-34 147.5 105 78.1
BcaC02g08141 Brassica carinata HOM05D001886 ORTHO05D004007 2.7e-31 138.7 112 66.1
C04p57930 Brassica napus HOM05D001886 ORTHO05D004007 2.7e-31 138.7 112 66.1
BolC4t27319H Brassica oleracea HOM05D001886 ORTHO05D004007 2.7e-31 138.7 112 66.1
Sp4g11590 Schrenkiella parvula HOM05D001886 ORTHO05D004007 3.5e-31 138.3 115 64.3
BcaB06g28246 Brassica carinata HOM05D001886 ORTHO05D004007 1.3e-30 136.3 107 66.4
C03p31370 Brassica napus HOM05D001886 ORTHO05D004007 1.3e-30 136.3 109 67.9
BcaC01g04990 Brassica carinata HOM05D001886 ORTHO05D004007 1.7e-30 136.0 109 67.9
A04p21800 Brassica napus HOM05D001886 ORTHO05D004007 1.7e-30 136.0 107 65.4
BolC3t15485H Brassica oleracea HOM05D001886 ORTHO05D004007 3.0e-30 135.2 109 67.0
CARHR121860 Cardamine hirsuta HOM05D001886 ORTHO05D004007 3.0e-30 135.2 98 72.4
A03p26260 Brassica napus HOM05D001886 ORTHO05D004007 3.9e-30 134.8 110 67.3
BraA03t11840Z Brassica rapa HOM05D001886 ORTHO05D004007 3.9e-30 134.8 110 67.3
BraA04t17747Z Brassica rapa HOM05D001886 ORTHO05D004007 5.1e-30 134.4 107 65.4
BcaB01g03123 Brassica carinata HOM05D001886 ORTHO05D004007 3.3e-29 131.7 108 65.7
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 5.6e-29 131.0 106 66.0
BraA09t41960Z Brassica rapa HOM05D001886 ORTHO05D004007 3.1e-27 125.2 107 59.8
AT1G07795 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 4.0e-27 124.8 107 59.8
AL1G18080 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 5.3e-27 124.4 107 58.9
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 9.0e-27 123.6 107 58.9
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 1.5e-26 122.9 105 60.0
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 3.4e-26 121.7 105 60.0
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 1.7e-25 119.4 107 57.0
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 2.2e-25 119.0 107 58.9
Carub.0001s0716 Capsella rubella HOM05D001886 ORTHO05D004007 2.2e-25 119.0 105 58.1
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 6.4e-25 117.5 105 56.2
THA.LOC104800648 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 6.4e-25 117.5 111 58.6
CARHR007610 Cardamine hirsuta HOM05D001886 ORTHO05D004007 5.4e-24 114.4 107 53.3
Aa31LG5G7470 Aethionema arabicum HOM05D001886 ORTHO05D004007 1.0e-22 110.2 106 52.8
C08p50390 Brassica napus HOM05D001886 ORTHO05D004007 4.3e-21 104.8 89 58.4
BolC8t52567H Brassica oleracea HOM05D001886 ORTHO05D004007 4.3e-21 104.8 89 58.4
BcaC07g41980 Brassica carinata HOM05D001886 ORTHO05D004007 2.2e-17 92.4 105 49.5
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 3.2e-16 88.6 96 50.0
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 9.3e-16 87.0 102 44.1
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 1.2e-15 86.7 103 43.7
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 1.2e-15 86.7 109 43.1
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 1.6e-15 86.3 111 47.7
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.6e-15 86.3 100 49.0
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 2.1e-15 85.9 103 45.6
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 2.1e-15 85.9 94 52.1
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 2.1e-15 85.9 108 42.6
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 3.5e-15 85.1 102 43.1
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 3.5e-15 85.1 94 48.9
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 3.5e-15 85.1 94 48.9
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 3.5e-15 85.1 107 43.9
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 4.6e-15 84.7 105 43.8
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 4.6e-15 84.7 104 43.3
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 7.9e-15 84.0 101 45.5
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.0e-14 83.6 97 47.4
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 1.3e-14 83.2 102 45.1
Cpa.g.sc190.15 Carica papaya HOM05D001886 ORTHO05D004007 1.8e-14 82.8 91 47.3
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 1.8e-14 82.8 91 47.3
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 2.3e-14 82.4 99 43.4
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 2.3e-14 82.4 106 43.4
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 2.3e-14 82.4 105 42.9
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 2.3e-14 82.4 103 40.8
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 3.0e-14 82.0 99 41.4
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 3.0e-14 82.0 101 41.6
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 3.9e-14 81.6 102 41.2
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 3.9e-14 81.6 102 41.2
AUR62036093 Chenopodium quinoa HOM05D001886 ORTHO05D004007 8.7e-14 80.5 96 45.8
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 8.7e-14 80.5 106 42.5
PGR142G2414 Punica granatum HOM05D001886 ORTHO05D004007 8.7e-14 80.5 96 42.7
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 8.7e-14 80.5 102 43.1
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 8.7e-14 80.5 102 43.1
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 8.7e-14 80.5 101 40.6
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 1.1e-13 80.1 109 42.2
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.5e-13 79.7 104 40.4
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.5e-13 79.7 104 40.4
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 1.5e-13 79.7 105 41.9
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 1.5e-13 79.7 105 41.9
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 2.5e-13 79.0 101 43.6
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 2.5e-13 79.0 100 42.0
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 2.5e-13 79.0 96 41.7
Duzib093G1578 Durio zibethinus HOM05D001886 ORTHO05D004007 3.3e-13 78.6 101 42.6
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 3.3e-13 78.6 97 42.3
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 4.3e-13 78.2 105 46.7
Cpa.g.sc188.23 Carica papaya HOM05D001886 ORTHO05D004007 4.3e-13 78.2 102 42.2
Gohir.A09G157900 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.3e-13 78.2 101 41.6
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 4.3e-13 78.2 104 38.5
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 5.6e-13 77.8 98 39.8
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 5.6e-13 77.8 104 38.5
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 5.6e-13 77.8 98 40.8
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 7.4e-13 77.4 99 44.4
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 7.4e-13 77.4 102 40.2
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 9.6e-13 77.0 102 39.2
Gohir.D09G153200 Gossypium hirsutum HOM05D001886 ORTHO05D004007 9.6e-13 77.0 101 40.6
Gorai.006G174700 Gossypium raimondii HOM05D001886 ORTHO05D004007 9.6e-13 77.0 101 40.6
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 1.3e-12 76.6 99 40.4
Thecc.05G043600 Theobroma cacao HOM05D001886 ORTHO05D004007 1.3e-12 76.6 101 41.6
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.6e-12 76.3 99 43.4
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.6e-12 76.3 99 43.4
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 2.1e-12 75.9 102 39.2
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.1e-12 75.9 102 37.3
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 2.1e-12 75.9 107 41.1
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 2.1e-12 75.9 102 40.2
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 2.8e-12 75.5 92 46.7
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 2.8e-12 75.5 102 37.3
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.7e-12 75.1 109 39.4
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 4.8e-12 74.7 99 40.4
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 8.2e-12 73.9 101 39.6
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 8.2e-12 73.9 98 37.8
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.1e-11 73.6 97 39.2
Hund04991 Selenicereus undatus HOM05D000437 ORTHO05D000324 1.4e-11 73.2 85 47.1
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 2.4e-11 72.4 111 36.9
FvH4_6g14180 Fragaria vesca HOM05D001886 ORTHO05D004007 2.4e-11 72.4 97 42.3
FAN05G2305 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.4e-11 72.4 97 42.3
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 2.4e-11 72.4 111 38.7
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 3.1e-11 72.0 87 46.0
FAN09G0249 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.1e-11 72.0 97 42.3
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 3.1e-11 72.0 97 41.2
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 3.1e-11 72.0 94 41.5
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 5.3e-11 71.2 87 46.0
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 5.3e-11 71.2 105 39.0
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 5.3e-11 71.2 111 37.8
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 6.9e-11 70.9 97 40.2
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 6.9e-11 70.9 111 38.7
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 9.0e-11 70.5 98 36.7
Sc12g0001630 Simmondsia chinensis HOM05D001886 ORTHO05D004007 9.0e-11 70.5 91 45.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.2e-10 70.1 98 36.7
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.2e-10 70.1 101 36.6
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 1.2e-10 70.1 105 38.1
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 2.0e-10 69.3 93 37.6
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 2.0e-10 69.3 103 39.8
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 2.0e-10 69.3 93 40.9
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 2.6e-10 68.9 104 37.5
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 3.4e-10 68.6 99 41.4
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 3.4e-10 68.6 92 41.3
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 4.5e-10 68.2 93 40.9
CsaV3_6G022260 Cucumis sativus L. HOM05D001886 ORTHO05D004007 5.8e-10 67.8 108 40.7
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 5.8e-10 67.8 92 41.3
AUR62009610 Chenopodium quinoa HOM05D001365 ORTHO05D001291 7.6e-10 67.4 83 42.2
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 1.3e-09 66.6 107 36.4
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 2.2e-09 65.9 92 39.1
Glyma.13G334000 Glycine max HOM05D001886 ORTHO05D004007 2.2e-09 65.9 95 47.4
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 2.2e-09 65.9 92 40.2
Sed0011835 Sechium edule HOM05D001886 ORTHO05D004007 2.9e-09 65.5 87 41.4
Medtr2g096630 Medicago truncatula HOM05D001886 ORTHO05D004007 4.9e-09 64.7 91 45.1
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 6.5e-09 64.3 102 33.3
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 8.4e-09 63.9 109 31.2
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 1.1e-08 63.5 99 38.4
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 1.1e-08 63.5 90 37.8
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 1.1e-08 63.5 99 36.4
VMungo1383G2619 Vigna mungo HOM05D001886 ORTHO05D004007 1.1e-08 63.5 101 33.7
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.4e-08 63.2 98 38.8
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.4e-08 63.2 101 37.6
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 1.9e-08 62.8 90 37.8
THA.LOC104823422 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.9e-08 62.8 98 35.7
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 2.5e-08 62.4 90 36.7
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 2.5e-08 62.4 103 31.1
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 3.2e-08 62.0 105 31.4
Lj3g0013632 Lotus japonicus HOM05D001886 ORTHO05D004007 3.2e-08 62.0 95 43.2
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 3.2e-08 62.0 95 36.8
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 4.2e-08 61.6 96 36.5
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 4.2e-08 61.6 90 36.7
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 4.2e-08 61.6 90 36.7
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 4.2e-08 61.6 101 38.6
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 5.5e-08 61.2 93 38.7
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 5.5e-08 61.2 97 34.0
arahy.Tifrunner.gnm1.ann1.F78JUJ Arachis hypogaea HOM05D001886 ORTHO05D004007 9.3e-08 60.5 84 45.2
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 9.3e-08 60.5 90 36.7
Lalb_Chr03g0026781 Lupinus albus HOM05D001886 ORTHO05D004007 9.3e-08 60.5 102 38.2
VMungo1080G1431 Vigna mungo HOM05D001886 ORTHO05D004007 9.3e-08 60.5 100 39.0
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.6e-07 59.7 91 38.5
ATR0723G053 Amborella trichopoda HOM05D001886 ORTHO05D004007 2.7e-07 58.9 91 35.2
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 3.5e-07 58.5 107 32.7
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 3.5e-07 58.5 95 34.7
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 4.6e-07 58.2 103 30.1
TPR.G34284 Trifolium pratense HOM05D001886 ORTHO05D004007 7.9e-07 57.4 85 44.7
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 1.8e-06 56.2 105 36.2
Phvul.L003643 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.8e-06 56.2 94 39.4
HPP92_018051 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.8e-06 56.2 92 38.0
HPP92_018060 Vanilla planifolia HOM05D001886 ORTHO05D004007 1.8e-06 56.2 92 38.0
Glyma.13G131500 Glycine max HOM05D001886 ORTHO05D004007 3.0e-06 55.5 91 38.5
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.9e-06 55.1 107 35.5
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 3.9e-06 55.1 107 35.5
Phvul.007G157600 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 3.9e-06 55.1 92 37.0
Zm00001eb028760 Zea mays HOM05D001886 ORTHO05D004007 3.9e-06 55.1 85 37.6
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 6.7e-06 54.3 92 38.0
arahy.Tifrunner.gnm1.ann1.5KK3LT Arachis hypogaea HOM05D001886 ORTHO05D004007 8.7e-06 53.9 76 46.1
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 8.7e-06 53.9 85 36.5
Gohir.A03G039500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 8.7e-06 53.9 68 41.2


User provided reference genes

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