Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G23000 Arabidopsis lyrata HOM05D001585 ORTHO05D080572 7.8e-25 116.3 58 100.0
AL5G27950 Arabidopsis lyrata HOM05D001585 ORTHO05D080698 7.8e-25 116.3 58 100.0
AL4G12750 Arabidopsis lyrata HOM05D001585 ORTHO05D080633 3.0e-24 114.4 58 98.3
AL3G48620 Arabidopsis lyrata HOM05D001585 ORTHO05D001677 3.5e-17 90.9 47 93.6
AT2G19600 Arabidopsis thaliana HOM05D001585 ORTHO05D001677 7.8e-17 89.7 47 91.5
Sp3g32980 Schrenkiella parvula HOM05D001585 ORTHO05D001677 3.0e-16 87.8 45 93.3
Thhalv10001937m.g Eutrema salsugineum HOM05D001585 ORTHO05D001677 3.9e-16 87.4 45 93.3
BcaB03g16749 Brassica carinata HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
BcaB08g34876 Brassica carinata HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
BcaC06g36604 Brassica carinata HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
A07p01080 Brassica napus HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
A07p01090 Brassica napus HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
A07p01120 Brassica napus HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
C07p02250 Brassica napus HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
C08p42500 Brassica napus HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
BolC7t40635H Brassica oleracea HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
BolC8t51811H Brassica oleracea HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
BraA07t27908Z Brassica rapa HOM05D001585 ORTHO05D001677 6.6e-16 86.7 45 91.1
CARHR110050 Cardamine hirsuta HOM05D001585 ORTHO05D001677 8.6e-16 86.3 44 93.2
A09p59210 Brassica napus HOM05D001585 ORTHO05D001677 1.5e-15 85.5 45 88.9
BraA09t41305Z Brassica rapa HOM05D001585 ORTHO05D001677 1.5e-15 85.5 45 88.9
BcaC07g41244 Brassica carinata HOM05D001585 ORTHO05D001677 2.5e-15 84.7 45 88.9
Aa31LG8G16610 Aethionema arabicum HOM05D001585 ORTHO05D001677 5.6e-15 83.6 47 85.1
Carub.0003s3389 Capsella rubella HOM05D001585 ORTHO05D001677 1.8e-13 78.6 47 83.0
THA.LOC104814610 Tarenaya hassleriana HOM05D001585 ORTHO05D001677 5.8e-12 73.6 45 80.0
Glyma.17G229700 Glycine max HOM05D001585 ORTHO05D001677 1.1e-10 69.3 45 71.1
Thecc.09G091700 Theobroma cacao HOM05D001585 ORTHO05D001677 1.1e-10 69.3 44 77.3
Atru.chr7.1568 Acer truncatum HOM05D001585 ORTHO05D001677 1.4e-10 68.9 43 76.7
arahy.Tifrunner.gnm1.ann1.F2HWMC Arachis hypogaea HOM05D001585 ORTHO05D001677 1.9e-10 68.6 45 73.3
arahy.Tifrunner.gnm1.ann1.WZ05FZ Arachis hypogaea HOM05D001585 ORTHO05D001677 1.9e-10 68.6 45 73.3
Phvul.001G034400 Phaseolus vulgaris HOM05D001585 ORTHO05D001677 2.4e-10 68.2 53 62.3
Eucgr.C00907 Eucalyptus grandis HOM05D001585 ORTHO05D001677 3.2e-10 67.8 43 76.7
FvH4_2g32020 Fragaria vesca HOM05D001585 ORTHO05D001677 3.2e-10 67.8 49 67.3
FAN20G0535 Fragaria x ananassa HOM05D001585 ORTHO05D001677 3.2e-10 67.8 49 67.3
FAN24G2378 Fragaria x ananassa HOM05D001585 ORTHO05D001677 3.2e-10 67.8 49 67.3
Cpa.g.sc93.16 Carica papaya HOM05D001585 ORTHO05D001677 4.1e-10 67.4 45 71.1
MD08G1043400 Malus domestica HOM05D001585 ORTHO05D001677 4.1e-10 67.4 44 72.7
MD15G1060700 Malus domestica HOM05D001585 ORTHO05D001677 4.1e-10 67.4 44 72.7
Prupe.1G413300 Prunus persica HOM05D001585 ORTHO05D001677 4.1e-10 67.4 44 72.7
Thhalv10013063m.g Eutrema salsugineum HOM05D001585 ORTHO05D001677 7.1e-10 66.6 44 72.7
RcHm_v2.0_Chr6g0310731 Rosa chinensis HOM05D001585 ORTHO05D001677 7.1e-10 66.6 49 65.3
AT5G11800 Arabidopsis thaliana HOM05D001585 ORTHO05D001677 9.2e-10 66.2 44 72.7
Carub.0006s1033 Capsella rubella HOM05D001585 ORTHO05D001677 9.2e-10 66.2 46 69.6
Duzib187G0785 Durio zibethinus HOM05D001585 ORTHO05D001677 9.2e-10 66.2 45 71.1
Manes.03G032400 Manihot esculenta HOM05D001585 ORTHO05D001677 9.2e-10 66.2 44 72.7
Aqoxy7G01247 Aquilegia oxysepala HOM05D001585 ORTHO05D001677 1.6e-09 65.5 51 68.6
CARHR201370 Cardamine hirsuta HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 77.3
Duzib168G0538 Durio zibethinus HOM05D001585 ORTHO05D001677 1.6e-09 65.5 46 67.4
Gohir.A13G193600 Gossypium hirsutum HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 70.5
Gohir.D13G199400 Gossypium hirsutum HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 70.5
Gorai.013G228100 Gossypium raimondii HOM05D001585 ORTHO05D001677 1.6e-09 65.5 44 70.5
Nitab4.5_0004456g0020 Nicotiana tabacum HOM05D001585 ORTHO05D001677 1.6e-09 65.5 45 71.1
Lalb_Chr14g0367751 Lupinus albus HOM05D001585 ORTHO05D001677 2.7e-09 64.7 52 59.6
Nitab4.5_0001584g0110 Nicotiana tabacum HOM05D001585 ORTHO05D001677 2.7e-09 64.7 45 71.1
Sopen08g018920 Solanum pennellii HOM05D001585 ORTHO05D001677 3.5e-09 64.3 45 68.9
PGSC0003DMG400029945 Solanum tuberosum HOM05D001585 ORTHO05D001677 3.5e-09 64.3 45 68.9
THA.LOC104799700 Tarenaya hassleriana HOM05D001585 ORTHO05D001677 3.5e-09 64.3 43 72.1
THA.LOC104811246 Tarenaya hassleriana HOM05D001585 ORTHO05D001677 3.5e-09 64.3 42 73.8
Phvul.002G304300 Phaseolus vulgaris HOM05D001585 ORTHO05D001677 4.6e-09 63.9 44 68.2
PGR142G0668 Punica granatum HOM05D001585 ORTHO05D001677 4.6e-09 63.9 43 69.8
CANSAT25G3803 Cannabis sativa HOM05D001585 ORTHO05D001677 6.0e-09 63.5 44 68.2
Solyc08g065360.3 Solanum lycopersicum HOM05D001585 ORTHO05D001677 6.0e-09 63.5 45 68.9
TWI34G1297 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 6.0e-09 63.5 44 65.9
BcaC03g13392 Brassica carinata HOM05D001585 ORTHO05D001677 7.8e-09 63.2 42 71.4
BcaC04g19194 Brassica carinata HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
BcaNung02652 Brassica carinata HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
BcaNung06825 Brassica carinata HOM05D001585 ORTHO05D001677 7.8e-09 63.2 42 71.4
A02p01210 Brassica napus HOM05D001585 ORTHO05D001677 7.8e-09 63.2 42 71.4
A10p25950 Brassica napus HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
C02p05380 Brassica napus HOM05D001585 ORTHO05D001677 7.8e-09 63.2 42 71.4
C09p65030 Brassica napus HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
BolC2t06487H Brassica oleracea HOM05D001585 ORTHO05D001677 7.8e-09 63.2 42 71.4
BolC9t59331H Brassica oleracea HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
BraA02t05100Z Brassica rapa HOM05D001585 ORTHO05D001677 7.8e-09 63.2 42 71.4
BraA10t44657Z Brassica rapa HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
Sp6g31800 Schrenkiella parvula HOM05D001585 ORTHO05D001677 7.8e-09 63.2 44 75.0
AL6G22550 Arabidopsis lyrata HOM05D001585 ORTHO05D001677 1.0e-08 62.8 46 67.4
TWI34G1940 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 1.0e-08 62.8 44 68.2
Dinv27979 Davidia involucrata HOM05D001585 ORTHO05D001677 1.3e-08 62.4 45 64.4
Sabra06G0178500 Salix brachista HOM05D001585 ORTHO05D001677 1.7e-08 62.0 46 69.6
Sc08g0008370 Simmondsia chinensis HOM05D001585 ORTHO05D001677 1.7e-08 62.0 46 69.6
Sc18g0001940 Simmondsia chinensis HOM05D001585 ORTHO05D001677 1.7e-08 62.0 36 77.8
Actinidia25261 Actinidia chinensis HOM05D001585 ORTHO05D001677 2.3e-08 61.6 47 63.8
Cfa003106 Carpinus fangiana HOM05D001585 ORTHO05D001677 3.0e-08 61.2 51 62.7
Lj4g0021490 Lotus japonicus HOM05D001585 ORTHO05D001677 3.0e-08 61.2 45 68.9
Ciclev10007842m.g Citrus clementina HOM05D001585 ORTHO05D001677 3.9e-08 60.8 36 80.6
Oeu018647.1 Olea europaea HOM05D001585 ORTHO05D001677 3.9e-08 60.8 46 65.2
CANSAT31G0003 Cannabis sativa HOM05D001585 ORTHO05D001677 5.1e-08 60.5 36 77.8
CANSAT56G2745 Cannabis sativa HOM05D001585 ORTHO05D001677 5.1e-08 60.5 36 77.8
Glyma.05G222500 Glycine max HOM05D001585 ORTHO05D001677 5.1e-08 60.5 44 65.9
Lj7A673G65 Lonicera japonica HOM05D001585 ORTHO05D001677 5.1e-08 60.5 49 65.3
Manes.16G103200 Manihot esculenta HOM05D001585 ORTHO05D001677 5.1e-08 60.5 43 67.4
TWI63G0046 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 5.1e-08 60.5 53 56.6
VMungo0251G0754 Vigna mungo HOM05D001585 ORTHO05D001677 5.1e-08 60.5 44 63.6
Ca_13173_v3 Cicer arietinum L. HOM05D001585 ORTHO05D001677 6.6e-08 60.1 45 62.2
Ca_14354_v3 Cicer arietinum L. HOM05D001585 ORTHO05D001677 6.6e-08 60.1 45 62.2
Glyma.14G093900 Glycine max HOM05D001585 ORTHO05D001677 6.6e-08 60.1 46 65.2
arahy.Tifrunner.gnm1.ann1.Q6VRMV Arachis hypogaea HOM05D001585 ORTHO05D001677 8.6e-08 59.7 44 65.9
arahy.Tifrunner.gnm1.ann1.WHT2R9 Arachis hypogaea HOM05D001585 ORTHO05D001677 8.6e-08 59.7 44 65.9
Dinv42305 Davidia involucrata HOM05D001585 ORTHO05D001677 8.6e-08 59.7 46 65.2
CSS0021246 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 1.1e-07 59.3 45 62.2
CSS0039494 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 1.1e-07 59.3 45 62.2
Nn8g38902 Nelumbo nucifera HOM05D001585 ORTHO05D001677 1.1e-07 59.3 44 65.9
Potri.018G054100 Populus trichocarpa HOM05D001585 ORTHO05D001677 1.1e-07 59.3 46 65.2
SGA_v2.0_scaffold187G40260 Striga asiatica HOM05D001585 ORTHO05D001677 1.1e-07 59.3 48 64.6
vmacro00146 Vaccinium macrocarpon HOM05D001585 ORTHO05D001677 1.1e-07 59.3 54 57.4
CSS0000314 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 1.5e-07 58.9 46 63.0
Potri.006G230400 Populus trichocarpa HOM05D001585 ORTHO05D001677 1.5e-07 58.9 46 67.4
QL02p001335 Quercus lobata HOM05D001585 ORTHO05D001677 1.5e-07 58.9 44 65.9
CiPaw.16G029000 Carya illinoinensis HOM05D001585 ORTHO05D001677 1.9e-07 58.5 53 54.7
Ca_17404_v3 Cicer arietinum L. HOM05D001585 ORTHO05D001677 1.9e-07 58.5 44 65.9
MD15G1204800 Malus domestica HOM05D001585 ORTHO05D001677 1.9e-07 58.5 45 62.2
Actinidia01192 Actinidia chinensis HOM05D001585 ORTHO05D001677 2.5e-07 58.2 45 62.2
Actinidia30309 Actinidia chinensis HOM05D001585 ORTHO05D001677 2.5e-07 58.2 45 62.2
Haze_25894 Corylus avellana HOM05D001585 ORTHO05D001677 2.5e-07 58.2 51 58.8
Glyma.08G029300 Glycine max HOM05D001585 ORTHO05D001677 2.5e-07 58.2 44 63.6
Gohir.D08G266200 Gossypium hirsutum HOM05D001585 ORTHO05D001677 2.5e-07 58.2 44 63.6
Gorai.004G283900 Gossypium raimondii HOM05D001585 ORTHO05D001677 2.5e-07 58.2 44 63.6
Nn6g35437 Nelumbo nucifera HOM05D001585 ORTHO05D001677 2.5e-07 58.2 44 63.6
Hund06687 Selenicereus undatus HOM05D001585 ORTHO05D001677 2.5e-07 58.2 45 62.2
MSTRG.25946 Avicennia marina HOM05D001585 ORTHO05D001677 3.3e-07 57.8 52 63.5
MELO3C010757.2 Cucumis melo HOM05D001585 ORTHO05D001677 3.3e-07 57.8 47 61.7
Hma1.2p1_0800F.1_g220020 Hydrangea macrophylla HOM05D001585 ORTHO05D001677 3.3e-07 57.8 45 66.7
Lj8A543G13 Lonicera japonica HOM05D001585 ORTHO05D001677 3.3e-07 57.8 47 59.6
Psat6g020840 Pisum sativum HOM05D001585 ORTHO05D001677 3.3e-07 57.8 46 63.0
Cfa017948 Carpinus fangiana HOM05D001585 ORTHO05D001677 4.3e-07 57.4 45 62.2
Haze_18199 Corylus avellana HOM05D001585 ORTHO05D001677 4.3e-07 57.4 45 62.2
SGA_v2.0_scaffold88G27224 Striga asiatica HOM05D001585 ORTHO05D001677 4.3e-07 57.4 46 65.2
TPR.G13009 Trifolium pratense HOM05D001585 ORTHO05D001677 5.6e-07 57.0 45 60.0
ClCG08G016990 Citrullus lanatus HOM05D001585 ORTHO05D001677 7.3e-07 56.6 45 62.2
CsaV3_2G025600 Cucumis sativus L. HOM05D001585 ORTHO05D001677 7.3e-07 56.6 45 62.2
HanXRQChr09g0238141 Helianthus annuus HOM05D001585 ORTHO05D001677 7.3e-07 56.6 41 68.3
Lsat_1_v5_gn_7_37560 Lactuca sativa HOM05D001585 ORTHO05D001677 7.3e-07 56.6 41 70.7
MBI04_g37459_MAGBIO Magnolia biondii HOM05D001585 ORTHO05D001677 7.3e-07 56.6 47 57.4
Psat7g019880 Pisum sativum HOM05D001585 ORTHO05D001677 7.3e-07 56.6 45 66.7
RcHm_v2.0_Chr2g0093081 Rosa chinensis HOM05D001585 ORTHO05D001677 7.3e-07 56.6 42 61.9
Gohir.A08G245200 Gossypium hirsutum HOM05D001585 ORTHO05D001677 9.5e-07 56.2 44 61.4
Lj5g0015997 Lotus japonicus HOM05D001585 ORTHO05D001677 9.5e-07 56.2 53 54.7
TWI32G0209 Tripterygium wilfordii HOM05D001585 ORTHO05D001677 9.5e-07 56.2 52 55.8
Cc06_g11220 Coffea canephora HOM05D001585 ORTHO05D001677 1.2e-06 55.8 49 65.3
Dinv36753 Davidia involucrata HOM05D001585 ORTHO05D001677 1.2e-06 55.8 47 59.6
Hma1.2p1_0482F.1_g162560 Hydrangea macrophylla HOM05D001585 ORTHO05D001677 1.2e-06 55.8 45 57.8
Lsat_1_v5_gn_6_13321 Lactuca sativa HOM05D001585 ORTHO05D001677 1.2e-06 55.8 44 63.6
ECA240G2803 Erigeron canadensis HOM05D001585 ORTHO05D001677 1.6e-06 55.5 43 65.1
Lalb_Chr05g0223611 Lupinus albus HOM05D001585 ORTHO05D001677 1.6e-06 55.5 45 60.0
Rhsim11G0044600 Rhododendron simsii HOM05D001585 ORTHO05D001677 1.6e-06 55.5 44 63.6
SalBow4G1098 Salvia bowleyana HOM05D001585 ORTHO05D001677 1.6e-06 55.5 45 62.2
SEGI_10592 Sequoiadendron giganteum HOM05D001585 ORTHO05D001677 1.6e-06 55.5 37 73.0
Medtr8g101640 Medicago truncatula HOM05D001585 ORTHO05D001677 2.1e-06 55.1 44 65.9
Oeu036340.1 Olea europaea HOM05D001585 ORTHO05D001677 2.1e-06 55.1 46 67.4
TPR.G25481 Trifolium pratense HOM05D001585 ORTHO05D001677 2.1e-06 55.1 44 65.9
MSTRG.11662 Avicennia marina HOM05D001585 ORTHO05D001677 2.8e-06 54.7 46 63.0
CSS0008147 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 2.8e-06 54.7 47 55.3
Gohir.A06G089000 Gossypium hirsutum HOM05D001585 ORTHO05D001677 2.8e-06 54.7 47 66.0
Gohir.D06G088000 Gossypium hirsutum HOM05D001585 ORTHO05D001677 2.8e-06 54.7 47 66.0
Gorai.010G101600 Gossypium raimondii HOM05D001585 ORTHO05D001677 2.8e-06 54.7 47 66.0
Hund25821 Selenicereus undatus HOM05D001585 ORTHO05D001677 2.8e-06 54.7 46 60.9
Thecc.09G053000 Theobroma cacao HOM05D001585 ORTHO05D001677 2.8e-06 54.7 47 66.0
ATR0705G169 Amborella trichopoda HOM05D001585 ORTHO05D001677 3.6e-06 54.3 36 72.2
Prupe.7G212100 Prunus persica HOM05D001585 ORTHO05D001677 3.6e-06 54.3 35 68.6
CiPaw.15G039600 Carya illinoinensis HOM05D001585 ORTHO05D001677 6.2e-06 53.5 53 50.9
Duzib187G0156 Durio zibethinus HOM05D001585 ORTHO05D001677 6.2e-06 53.5 47 63.8
HanXRQChr03g0060741 Helianthus annuus HOM05D001585 ORTHO05D001677 6.2e-06 53.5 42 66.7
CSS0032721 Camellia sinensis var. sinensis HOM05D001585 ORTHO05D001677 8.1e-06 53.1 47 53.2
Migut.A00140 Erythranthe guttata HOM05D001585 ORTHO05D001677 8.1e-06 53.1 46 60.9


User provided reference genes

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