Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.3e-52 208.8 114 100.0
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.0e-48 195.7 114 92.1
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.0e-44 183.3 115 88.7
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 8.1e-42 173.7 117 82.1
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 4.0e-41 171.4 115 85.2
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 6.4e-39 164.1 115 78.3
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.4e-38 162.9 116 79.3
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.4e-38 162.9 116 79.3
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.4e-38 162.9 116 79.3
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 4.1e-38 161.4 116 74.1
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 9.2e-38 160.2 114 74.6
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 2.1e-37 159.1 113 77.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 2.1e-37 159.1 113 77.0
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 7.8e-37 157.1 115 75.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 3.0e-36 155.2 116 75.9
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 3.0e-36 155.2 116 75.9
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 3.0e-36 155.2 116 75.9
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-35 153.3 117 74.4
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.0e-32 142.5 121 69.4
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.7e-31 139.4 117 67.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 6.6e-28 127.5 104 71.2
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 3.6e-26 121.7 121 60.3
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.8e-25 119.4 118 62.7
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 3.1e-25 118.6 117 61.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 3.1e-25 118.6 117 61.5
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 8.9e-25 117.1 121 59.5
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 8.9e-25 117.1 115 58.3
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 118 61.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 1.2e-24 116.7 115 58.3
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-24 116.3 117 59.8
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 2.0e-24 115.9 120 56.7
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.6e-24 115.5 112 60.7
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 5.8e-24 114.4 117 59.8
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.7e-23 112.8 115 58.3
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.2e-23 112.5 118 58.5
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 3.8e-23 111.7 117 59.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 3.8e-23 111.7 120 56.7
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 3.8e-23 111.7 117 58.1
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.8e-23 111.7 117 59.0
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.8e-23 111.7 118 60.2
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.8e-23 111.7 117 58.1
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 4.9e-23 111.3 115 59.1
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 4.9e-23 111.3 117 59.8
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 6.4e-23 110.9 116 56.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 8.4e-23 110.5 121 58.7
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 8.4e-23 110.5 126 56.3
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.1e-22 110.2 115 56.5
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 1.1e-22 110.2 121 57.9
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.4e-22 109.8 117 57.3
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.9e-22 109.4 115 58.3
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 112 59.8
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.9e-22 109.4 120 56.7
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 2.4e-22 109.0 116 57.8
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.4e-22 109.0 121 57.0
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 2.4e-22 109.0 121 56.2
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 4.2e-22 108.2 113 58.4
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 4.2e-22 108.2 123 59.3
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 7.1e-22 107.5 118 56.8
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 7.1e-22 107.5 122 57.4
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 9.3e-22 107.1 121 57.0
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 9.3e-22 107.1 120 57.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.2e-21 106.7 116 56.9
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 1.6e-21 106.3 121 57.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.6e-21 106.3 121 57.0
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.1e-21 105.9 121 57.0
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 2.7e-21 105.5 120 55.0
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.5e-21 105.1 112 57.1
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.5e-21 105.1 119 56.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.6e-21 104.8 121 56.2
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 4.6e-21 104.8 116 58.6
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 4.6e-21 104.8 123 52.0
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 6.0e-21 104.4 131 58.0
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.0e-21 104.4 121 56.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.8e-21 104.0 112 56.2
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 7.8e-21 104.0 115 56.5
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-20 103.6 121 52.9
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.0e-20 103.6 123 53.7
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.7e-20 102.8 121 52.1
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.7e-20 102.8 116 56.0
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.3e-20 102.4 118 55.1
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 2.3e-20 102.4 123 56.9
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.0e-20 102.1 121 52.9
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 3.9e-20 101.7 118 54.2
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 3.9e-20 101.7 115 54.8
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 5.1e-20 101.3 117 53.8
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 5.1e-20 101.3 117 53.0
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 8.7e-20 100.5 117 53.8
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 8.7e-20 100.5 121 56.2
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.1e-19 100.1 117 51.3
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.5e-19 99.0 116 54.3
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 3.3e-19 98.6 116 56.9
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 3.3e-19 98.6 116 53.4
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 4.3e-19 98.2 116 56.0
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 5.6e-19 97.8 124 54.8
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 5.6e-19 97.8 124 54.8
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 5.6e-19 97.8 118 53.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 5.6e-19 97.8 117 52.1
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 5.6e-19 97.8 112 51.8
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 9.6e-19 97.1 117 55.6
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 9.6e-19 97.1 117 53.0
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.3e-18 96.7 107 59.8
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 1.6e-18 96.3 112 53.6
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 1.6e-18 96.3 113 55.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 8.1e-18 94.0 116 51.7
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 1.4e-17 93.2 122 50.0
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.0e-17 91.7 113 53.1
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.0e-16 89.4 123 49.6
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 2.6e-16 89.0 114 51.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.6e-16 89.0 125 47.2
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.4e-16 88.6 121 50.4
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 7.6e-16 87.4 114 53.5
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 4.2e-14 81.6 103 51.5
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 5.4e-14 81.3 118 45.8
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 4.6e-13 78.2 121 47.9
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.9e-13 77.4 115 50.4
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 7.9e-13 77.4 111 46.8
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.3e-12 76.6 115 50.4
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.8e-12 76.3 106 50.9
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.9e-12 75.1 114 45.6
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 1.5e-11 73.2 157 40.8
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 4.3e-11 71.6 106 50.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 7.4e-11 70.9 116 44.8
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 7.4e-11 70.9 103 50.5
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 7.4e-11 70.9 103 50.5
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 6.2e-10 67.8 120 42.5
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 6.2e-10 67.8 109 42.2
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.1e-09 67.0 86 46.5
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 4.0e-09 65.1 85 50.6
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.9e-09 64.3 81 45.7
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 6.9e-09 64.3 126 41.3
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 9.0e-09 63.9 66 65.2
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.5e-08 63.2 47 74.5
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 5.8e-08 61.2 86 45.3
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 2.9e-07 58.9 67 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 4.2e-06 55.1 109 37.6
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.2e-06 55.1 103 37.9


User provided reference genes

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