Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 7.2e-145 517.3 275 100.0
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.4e-84 317.0 266 69.9
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 8.9e-71 271.2 312 55.8
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.6e-70 269.6 315 55.2
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.1e-68 264.2 315 54.6
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 1.9e-68 263.5 321 52.6
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.0e-66 257.7 311 53.1
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.0e-66 257.7 311 53.1
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.1e-65 254.2 310 52.6
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 3.3e-65 252.7 305 52.5
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 4.3e-65 252.3 311 53.1
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 1.3e-64 250.8 321 51.4
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 1.6e-64 250.4 314 52.2
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.1e-63 247.7 305 51.1
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 2.4e-63 246.5 334 49.1
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 3.1e-63 246.1 309 51.5
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 3.1e-63 246.1 309 51.5
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 7.6e-62 241.5 301 53.5
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.2e-60 235.7 317 49.5
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 4.2e-60 235.7 312 49.4
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.7e-59 233.0 348 46.8
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.6e-59 232.3 157 80.3
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 1.6e-56 223.8 295 50.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 9.0e-55 218.0 314 45.9
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 7.6e-54 214.9 314 45.5
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 7.6e-54 214.9 314 45.5
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.7e-53 213.8 317 45.7
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.9e-53 213.0 318 45.0
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.6e-51 207.2 312 44.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.6e-51 207.2 315 43.8
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 2.1e-51 206.8 316 44.3
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.7e-51 206.5 317 45.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.7e-51 206.5 302 45.7
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 3.5e-51 206.1 312 45.2
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.3e-50 204.1 318 43.7
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.8e-50 203.8 319 43.9
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.3e-50 203.4 315 43.8
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.3e-50 203.4 305 45.6
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 8.7e-50 201.4 295 45.8
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 1.5e-49 200.7 325 40.3
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.9e-49 200.3 314 43.3
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 1.1e-47 194.5 293 45.4
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 5.3e-47 192.2 299 44.1
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 1.2e-46 191.0 299 43.5
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 3.4e-46 189.5 315 39.7
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.8e-46 188.7 320 41.6
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 7.6e-46 188.3 300 43.0
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.0e-45 188.0 322 41.6
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.3e-45 187.6 312 41.0
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.3e-45 187.6 312 41.0
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.7e-45 187.2 299 42.1
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.7e-45 187.2 296 42.6
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.7e-45 187.2 322 41.0
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.2e-45 186.8 322 41.0
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 3.8e-45 186.0 292 42.5
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.9e-45 185.7 306 40.8
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.9e-45 185.7 306 40.8
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 1.9e-44 183.7 311 42.8
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.5e-44 183.3 313 41.2
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 5.5e-44 182.2 279 44.4
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 9.3e-44 181.4 314 41.1
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 1.6e-43 180.6 320 40.3
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.6e-43 180.6 320 40.3
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 3.5e-43 179.5 300 42.7
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.5e-43 179.5 320 41.6
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.6e-43 179.1 320 40.0
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 6.0e-43 178.7 297 43.1
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 7.9e-43 178.3 285 42.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.3e-42 177.6 302 41.7
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.3e-42 177.6 277 45.1
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.3e-42 176.8 314 39.8
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.9e-42 176.0 295 40.7
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.5e-41 174.1 287 41.5
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.6e-41 171.4 315 39.7
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 9.6e-41 171.4 235 46.0
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 2.8e-40 169.9 303 41.3
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 5.3e-39 165.6 274 42.0
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 9.0e-39 164.9 295 40.3
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 1.5e-38 164.1 305 38.7
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.5e-38 164.1 282 41.5
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.0e-38 163.7 294 39.5
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 3.4e-38 162.9 302 39.4
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 1.0e-37 161.4 292 37.0
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.3e-37 161.0 311 38.6
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 2.9e-37 159.8 314 37.6
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 5.0e-37 159.1 309 39.2
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 3.2e-36 156.4 294 38.8
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 3.2e-36 156.4 319 38.2
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.2e-36 156.0 294 37.4
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.3e-34 150.2 251 40.6
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 3.0e-34 149.8 287 38.3
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 5.1e-34 149.1 294 39.5
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.5e-33 147.5 312 38.8
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 1.9e-33 147.1 286 36.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 3.3e-33 146.4 288 38.5
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 1.6e-32 144.1 310 35.2
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 3.7e-32 142.9 289 36.7
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.4e-31 140.2 294 37.8
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 9.0e-31 138.3 313 34.8
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 1.0e-29 134.8 304 35.9
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.7e-29 134.0 328 33.8
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.4e-28 131.0 304 35.2
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.4e-28 131.0 297 37.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.4e-28 131.0 300 35.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.4e-28 131.0 342 32.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 3.2e-28 129.8 241 36.9
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 9.4e-28 128.3 290 35.5
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 3.6e-27 126.3 298 33.9
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 3.6e-27 126.3 298 33.9
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 4.6e-27 125.9 310 33.5
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.0e-26 124.8 303 34.0
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.0e-26 123.2 303 34.0
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-25 121.3 219 35.2
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.1e-25 121.3 287 34.5
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.1e-25 121.3 292 34.2
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.5e-25 120.9 289 33.6
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 2.0e-25 120.6 290 33.4
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.1e-23 114.8 274 32.8
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 1.8e-23 114.0 295 31.5
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 2.0e-22 110.5 318 31.1
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 2.0e-22 110.5 295 33.6
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.4e-22 109.8 123 50.4
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 1.3e-21 107.8 314 30.6
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 8.5e-21 105.1 229 34.5
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 2.5e-20 103.6 275 33.1
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.6e-19 100.9 273 30.4
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.7e-19 99.4 241 34.9
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.9e-19 98.6 100 59.0
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 1.1e-17 94.7 285 31.9
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.0e-17 94.0 325 30.2
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 3.7e-16 89.7 166 39.8
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 2.4e-15 87.0 305 28.5
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.6e-14 84.3 77 55.8
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 9.4e-12 75.1 74 51.4
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.6e-11 74.3 100 49.0
CARHR120450 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.0e-10 71.6 107 47.7
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 8.8e-10 68.6 127 35.4
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 2.6e-09 67.0 96 47.9
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 2.6e-09 67.0 82 46.3
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 2.8e-08 63.5 142 38.7
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 6.3e-08 62.4 307 25.7
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 8.2e-08 62.0 123 37.4
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.8e-07 60.8 188 31.9
Sp4g10580 Schrenkiella parvula HOM05D004638 ORTHO05D371852 4.1e-07 59.7 155 35.5
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.5e-06 56.2 76 40.8


User provided reference genes

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